Merge pull request #2123 from MIT-LCP/dependabot/github_actions/actions/setup-python-7

Bump actions/setup-python from 5 to 7

Author: alistairewj

.github/workflows/lint_sqlfluff.yml

@@ -13,7 +13,7 @@ jobs:
           # Full history so we can diff the PR branch against its base
           fetch-depth: 0
       - name: Install Python
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@v7
         with:
           python-version: "3.12"
       - name: install sqlfluff

.github/workflows/regenerate_dialects.yml

@@ -27,7 +27,7 @@ jobs:
         with:
           token: ${{ steps.app-token.outputs.token }}
 
-      - uses: actions/setup-python@v5
+      - uses: actions/setup-python@v7
         with:
           python-version: "3.12"
 

.github/workflows/sql_syntax_check.yml

@@ -16,7 +16,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v7
-      - uses: actions/setup-python@v5
+      - uses: actions/setup-python@v7
         with:
           python-version: "3.12"
       - name: Install locked dependencies

.github/workflows/transpile.yml

@@ -10,7 +10,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v7
-      - uses: actions/setup-python@v5
+      - uses: actions/setup-python@v7
         with:
           python-version: "3.10"
       - name: Install locked dependencies
@@ -28,7 +28,7 @@ jobs:
       checks: write
     steps:
       - uses: actions/checkout@v7
-      - uses: actions/setup-python@v5
+      - uses: actions/setup-python@v7
         with:
           python-version: "3.12"
       - name: Install locked dependencies

mimic-iii/concepts/durations/neuroblock_dose.sql

@@ -28,7 +28,7 @@ with drugmv as
     , 1 as drug
 
     -- the 'stopped' column indicates if a drug has been disconnected
-    , max(case when stopped in ('Stopped','D/C''d') then 1 else 0 end) as drug_stopped
+    , max(case when stopped in ('Stopped','D/C\'d') then 1 else 0 end) as drug_stopped
 
     -- we only include continuous infusions, therefore expect a rate
     , max(case
@@ -68,7 +68,7 @@ with drugmv as
     , 1 as drug
 
     -- the 'stopped' column indicates if a drug has been disconnected
-    , max(case when stopped in ('Stopped','D/C''d') then 1 else 0 end) as drug_stopped
+    , max(case when stopped in ('Stopped','D/C\'d') then 1 else 0 end) as drug_stopped
     , max(case when valuenum <= 10 then 0 else 1 end) as drug_null
 
     -- educated guess!

mimic-iii/concepts_duckdb/durations/neuroblock_dose.sql

@@ -18,7 +18,7 @@ WITH drugmv AS (
     icustay_id,
     charttime,
     1 AS drug,
-    MAX(CASE WHEN stopped IN ('Stopped', 'D/C' || 'd') THEN 1 ELSE 0 END) AS drug_stopped,
+    MAX(CASE WHEN stopped IN ('Stopped', 'D/C''d') THEN 1 ELSE 0 END) AS drug_stopped,
     MAX(
       CASE
         WHEN itemid >= 40000 AND NOT amount IS NULL
@@ -55,7 +55,7 @@ WITH drugmv AS (
     icustay_id,
     charttime,
     1 AS drug,
-    MAX(CASE WHEN stopped IN ('Stopped', 'D/C' || 'd') THEN 1 ELSE 0 END) AS drug_stopped,
+    MAX(CASE WHEN stopped IN ('Stopped', 'D/C''d') THEN 1 ELSE 0 END) AS drug_stopped,
     MAX(CASE WHEN valuenum <= 10 THEN 0 ELSE 1 END) AS drug_null,
     MAX(CASE WHEN valuenum <= 10 THEN valuenum ELSE NULL END) AS drug_rate,
     MAX(CASE WHEN valuenum > 10 THEN valuenum ELSE NULL END) AS drug_amount

mimic-iii/concepts_postgres/durations/neuroblock_dose.sql

@@ -22,7 +22,7 @@ WITH drugmv AS (
     icustay_id,
     charttime, /* where clause below ensures all rows are instance of the drug */
     1 AS drug, /* the 'stopped' column indicates if a drug has been disconnected */
-    MAX(CASE WHEN stopped IN ('Stopped', 'D/C' || 'd') THEN 1 ELSE 0 END) AS drug_stopped, /* we only include continuous infusions, therefore expect a rate */
+    MAX(CASE WHEN stopped IN ('Stopped', 'D/C''d') THEN 1 ELSE 0 END) AS drug_stopped, /* we only include continuous infusions, therefore expect a rate */
     MAX(
       CASE
         WHEN itemid >= 40000 AND NOT amount IS NULL
@@ -60,7 +60,7 @@ WITH drugmv AS (
     icustay_id,
     charttime, /* where clause below ensures all rows are instance of the drug */
     1 AS drug, /* the 'stopped' column indicates if a drug has been disconnected */
-    MAX(CASE WHEN stopped IN ('Stopped', 'D/C' || 'd') THEN 1 ELSE 0 END) AS drug_stopped,
+    MAX(CASE WHEN stopped IN ('Stopped', 'D/C''d') THEN 1 ELSE 0 END) AS drug_stopped,
     MAX(CASE WHEN valuenum <= 10 THEN 0 ELSE 1 END) AS drug_null, /* educated guess! */
     MAX(CASE WHEN valuenum <= 10 THEN valuenum ELSE NULL END) AS drug_rate,
     MAX(CASE WHEN valuenum > 10 THEN valuenum ELSE NULL END) AS drug_amount