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fix(mimic-iv): add missing temperature itemids to vitalsign concept #2042

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fix(mimic-iv): add missing temperature itemids to vitalsign concept #2042

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11 changes: 8 additions & 3 deletions mimic-iv/concepts/measurement/vitalsign.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -53,12 +53,13 @@ SELECT
AND valuenum < 120
THEN (valuenum - 32) / 1.8
-- already in degC, no conversion necessary
WHEN itemid IN (223762)
-- includes core/blood temps (CCO) and Arctic Sun/Alsius temps
WHEN itemid IN (223762, 226329, 227632, 227634)
AND valuenum > 10
AND valuenum < 50
THEN valuenum END)
AS NUMERIC), 2) AS temperature
, MAX(CASE WHEN itemid = 224642 THEN value END
, MAX(CASE WHEN itemid IN (224642, 227630, 227631) THEN value END
) AS temperature_site
, AVG(CASE WHEN itemid IN (220277)
AND valuenum > 0
Expand Down Expand Up @@ -91,10 +92,14 @@ WHERE ce.stay_id IS NOT NULL
, 220621 -- Glucose (serum)
, 226537 -- Glucose (whole blood)
-- TEMPERATURE
-- 226329 -- Blood Temperature CCO (C)
, 226329 -- Blood Temperature CCO (C)
, 227632 -- Arctic Sun/Alsius Temp #1 C
, 227634 -- Arctic Sun/Alsius Temp #2 C
, 223762 -- "Temperature Celsius"
, 223761 -- "Temperature Fahrenheit"
, 224642 -- Temperature Site
, 227630 -- Arctic Sun Temp #1 Location
, 227631 -- Arctic Sun Temp #2 Location
)
GROUP BY ce.subject_id, ce.stay_id, ce.charttime
;
11 changes: 8 additions & 3 deletions mimic-iv/concepts_duckdb/measurement/vitalsign.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -41,13 +41,13 @@ SELECT
THEN (
valuenum - 32
) / 1.8
WHEN itemid IN (223762) AND valuenum > 10 AND valuenum < 50
WHEN itemid IN (223762, 226329, 227632, 227634) AND valuenum > 10 AND valuenum < 50
THEN valuenum
END
) AS DECIMAL(38, 9)),
2
) AS temperature,
MAX(CASE WHEN itemid = 224642 THEN value END) AS temperature_site,
MAX(CASE WHEN itemid IN (224642, 227630, 227631) THEN value END) AS temperature_site,
AVG(
CASE WHEN itemid IN (220277) AND valuenum > 0 AND valuenum <= 100 THEN valuenum END
) AS spo2,
Expand All @@ -72,9 +72,14 @@ WHERE
225664,
220621,
226537,
226329,
227632,
227634,
223762,
223761,
224642
224642,
227630,
227631
)
GROUP BY
ce.subject_id,
Expand Down
17 changes: 12 additions & 5 deletions mimic-iv/concepts_postgres/measurement/vitalsign.sql
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Original file line number Diff line number Diff line change
@@ -1,6 +1,8 @@
-- THIS SCRIPT IS AUTOMATICALLY GENERATED. DO NOT EDIT IT DIRECTLY.
DROP TABLE IF EXISTS mimiciv_derived.vitalsign; CREATE TABLE mimiciv_derived.vitalsign AS
/* This query pivots the vital signs for the entire patient stay. */ /* The result is a tabler with stay_id, charttime, and various */ /* vital signs, with one row per charted time. */
/* This query pivots the vital signs for the entire patient stay. */
/* The result is a tabler with stay_id, charttime, and various */
/* vital signs, with one row per charted time. */
SELECT
ce.subject_id,
ce.stay_id,
Expand Down Expand Up @@ -42,13 +44,13 @@ SELECT
THEN CAST((
valuenum - 32
) AS DOUBLE PRECISION) / 1.8
WHEN itemid IN (223762) AND valuenum > 10 AND valuenum < 50
WHEN itemid IN (223762, 226329, 227632, 227634) AND valuenum > 10 AND valuenum < 50
THEN valuenum
END
) AS DECIMAL(38, 9)),
2
) AS temperature,
MAX(CASE WHEN itemid = 224642 THEN value END) AS temperature_site,
MAX(CASE WHEN itemid IN (224642, 227630, 227631) THEN value END) AS temperature_site,
AVG(
CASE WHEN itemid IN (220277) AND valuenum > 0 AND valuenum <= 100 THEN valuenum END
) AS spo2,
Expand All @@ -72,10 +74,15 @@ WHERE
220277, /* SPO2, peripheral */ /* GLUCOSE, both lab and fingerstick */
225664, /* Glucose finger stick */
220621, /* Glucose (serum) */
226537, /* Glucose (whole blood) */ /* TEMPERATURE */ /* 226329 -- Blood Temperature CCO (C) */
226537, /* Glucose (whole blood) */ /* TEMPERATURE */
226329, /* Blood Temperature CCO (C) */
227632, /* Arctic Sun/Alsius Temp #1 C */
227634, /* Arctic Sun/Alsius Temp #2 C */
223762, /* "Temperature Celsius" */
223761, /* "Temperature Fahrenheit" */
224642 /* Temperature Site */
224642, /* Temperature Site */
227630, /* Arctic Sun Temp #1 Location */
227631 /* Arctic Sun Temp #2 Location */
)
GROUP BY
ce.subject_id,
Expand Down