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fix: aline notebook uses concepts_postgres paths #2057

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fix: aline notebook uses concepts_postgres paths #2057

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8 changes: 4 additions & 4 deletions mimic-iii/notebooks/aline/aline.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -61,7 +61,7 @@
"aline_path = './'\n",
"\n",
"# location of the queries to generate materialized views from the MIMIC code repository\n",
"concepts_path = '../../concepts/'\n",
"concepts_path = '../../concepts_postgres/'\n",
"\n",
"# specify user/password/where the database is\n",
"sqluser = 'postgres'\n",
Expand Down Expand Up @@ -97,7 +97,7 @@
"Before generating the aline cohort, we require the following materialized views to be already generated:\n",
"\n",
"* angus - from `angus.sql`\n",
"* weightdurations - from `weight-durations.sql`\n",
"* weightdurations - from `weight_durations.sql`\n",
"* heightweight - from `heightweight.sql`\n",
"* aline_vaso_flag - from `aline_vaso_flag.sql`\n",
"\n",
Expand All @@ -123,7 +123,7 @@
"# list of queries we will execute in turn\n",
"queries = [\n",
" 'sepsis/angus.sql',\n",
" 'durations/weight-durations.sql',\n",
" 'durations/weight_durations.sql',\n",
" 'demographics/heightweight.sql',\n",
" 'aline_vaso_flag.sql'\n",
"]\n",
Expand Down Expand Up @@ -1718,4 +1718,4 @@
},
"nbformat": 4,
"nbformat_minor": 1
}
}
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