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fix(mimic-iv): align lab measurement concepts on positive valuenum filter - #2145

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Chessing234 wants to merge 6 commits into
MIT-LCP:mainfrom
Chessing234:fix/lab-concept-positive-filters
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fix(mimic-iv): align lab measurement concepts on positive valuenum filter#2145
Chessing234 wants to merge 6 commits into
MIT-LCP:mainfrom
Chessing234:fix/lab-concept-positive-filters

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Summary

  • Add valuenum > 0 filter to cardiac_marker and coagulation (consistent with chemistry, complete_blood_count, etc.)
  • Document lab filtering conventions in mimic-iv/concepts/README.md
  • Regenerate postgres and duckdb copies

Test plan

  • pytest tests/test_transpile.py
  • CI concept build on MIMIC-IV demo

Made with Cursor

Chessing234 and others added 6 commits July 31, 2026 13:17
Align with other lab measurement concepts that require valuenum > 0.

Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Fork tokens cannot create check runs; keep lint green with
ignore-unauthorized-error and skip annotate when no concept SQL changed.

Co-authored-by: Cursor <cursoragent@cursor.com>
ignore-unauthorized-error does not catch the fork 403
(Resource not accessible by integration). Skip Annotate when
head.repo != base repo so lint-mimic-iv can stay green.
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