DeepETPicker_ProPicker/environment.yml at main · MLI-lab/DeepETPicker_ProPicker · GitHub

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name: deepetpicker
channels:
  - pytorch
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - blas=1.0=mkl
  - bzip2=1.0.8=h4bc722e_7
  - ca-certificates=2025.1.31=hbcca054_0
  - cudatoolkit=11.0.221=h6bb024c_0
  - freetype=2.12.1=h4a9f257_0
  - giflib=5.2.2=h5eee18b_0
  - intel-openmp=2023.1.0=hdb19cb5_46306
  - jpeg=9b=h024ee3a_2
  - lcms2=2.12=h3be6417_0
  - ld_impl_linux-64=2.43=h712a8e2_2
  - libffi=3.4.2=h7f98852_5
  - libgcc=14.2.0=h77fa898_1
  - libgcc-ng=14.2.0=h69a702a_1
  - libgomp=14.2.0=h77fa898_1
  - liblzma=5.6.4
  - libnsl=2.0.1=hd590300_0
  - libpng=1.6.39=h5eee18b_0
  - libsqlite=3.46.0=hde9e2c9_0
  - libstdcxx-ng=11.2.0=h1234567_1
  - libtiff=4.2.0=h85742a9_0
  - libuuid=2.38.1=h0b41bf4_0
  - libwebp=1.2.0=h89dd481_0
  - libwebp-base=1.2.0=h27cfd23_0
  - libxcrypt=4.4.36=hd590300_1
  - libzlib=1.2.13=h4ab18f5_6
  - lz4-c=1.9.4=h6a678d5_1
  - mkl=2023.1.0=h213fc3f_46344
  - mkl-service=2.4.0=py39h5eee18b_2
  - mkl_fft=1.3.11=py39h5eee18b_0
  - mkl_random=1.2.8=py39h1128e8f_0
  - ncurses=6.5=h2d0b736_3
  - ninja=1.12.1=h06a4308_0
  - ninja-base=1.12.1=hdb19cb5_0
  - openssl=3.4.0=h7b32b05_1
  - pillow=9.3.0=py39hace64e9_1
  - pip=25.0=pyh8b19718_0
  - python=3.9.21=he870216_1
  - python_abi=3.9=2_cp39
  - pytorch=1.7.1=py3.9_cuda11.0.221_cudnn8.0.5_0
  - readline=8.2=h8228510_1
  - setuptools=75.8.0=pyhff2d567_0
  - sqlite=3.45.3=h5eee18b_0
  - tbb=2021.8.0=hdb19cb5_0
  - tk=8.6.14=h39e8969_0
  - torchaudio=0.7.2=py39
  - torchvision=0.8.2=py39_cu110
  - typing_extensions=4.12.2=py39h06a4308_0
  - wheel=0.45.1=pyhd8ed1ab_1
  - xz=5.6.4
  - zlib=1.2.13=h4ab18f5_6
  - zstd=1.4.9=haebb681_0
  - pip:
      - absl-py==2.1.0
      - argparse==1.4.0
      - art==6.4
      - asciitree==0.3.3
      - batchgenerators==0.25.1
      - contourpy==1.3.0
      - cycler==0.12.1
      - fasteners==0.19
      - fonttools==4.55.8
      - fsspec==2025.2.0
      - future==1.0.0
      - grpcio==1.70.0
      - h5py==3.12.1
      - imageio==2.37.0
      - importlib-metadata==8.6.1
      - importlib-resources==6.5.2
      - joblib==1.4.2
      - kiwisolver==1.4.7
      - lazy-loader==0.4
      - linecache2==1.0.0
      - llvmlite==0.43.0
      - markdown==3.7
      - markupsafe==3.0.2
      - matplotlib==3.9.4
      - mrcfile==1.5.4
      - networkx==3.2.1
      - numba==0.60.0
      - numcodecs==0.12.1
      - numexpr==2.10.2
      - numpy==1.26.4
      - opencv-python==4.11.0.86
      - packaging==24.2
      - pandas==2.2.3
      - protobuf==5.29.3
      - pycm==4.0
      - pyparsing==3.2.1
      - pystardb==0.4.3
      - python-dateutil==2.9.0.post0
      - pytorch-lightning==1.1.0
      - pytz==2025.1
      - pyyaml==6.0.2
      - scikit-image==0.24.0
      - scikit-learn==1.6.1
      - scikit-plot==0.3.7
      - scipy==1.10.1
      - setuptools-scm==8.1.0
      - six==1.17.0
      - tabulate==0.9.0
      - tensorboard==2.18.0
      - tensorboard-data-server==0.7.2
      - threadpoolctl==3.5.0
      - tifffile==2024.8.30
      - tomli==2.2.1
      - tomotwin-cryoet==0.9.1.2
      - tqdm==4.67.1
      - traceback2==1.4.0
      - tzdata==2025.1
      - unittest2==1.1.0
      - werkzeug==3.1.3
      - zarr==2.18.2
      - zipp==3.21.0
prefix: /opt/conda/envs/deepetpicker