feat!: refactoring of workflow to make it more flexible, remove hardcoded options#32

Merged

rabioinf merged 27 commits intomainfrom

Mar 12, 2026

Commits on Oct 1, 2025

feat: major refactoring of logic and replacement of custom rules with wrappers
m-jahn
committed

Commits on Oct 6, 2025

fix: replaced samtools flagstat with wrapper
m-jahn
committed

Commits on Oct 13, 2025

Commits on Oct 15, 2025

fix: some fixes to accomodate single-end data and/or no UMIs
m-jahn
committed

Commits on Oct 16, 2025

fix: replace hard-coded GFF requirements with flexible rules
m-jahn
committed

Commits on Mar 5, 2026

Commits on Mar 6, 2026

fix: added names to CI workflows
m-jahn
committed