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Author: davidmeunier79

docs/derivatives.rst

@@ -1,8 +1,5 @@
 :orphan:
 
-.. _derivatives:
-
-
 .. _derivatives:
 
 ***********
@@ -27,7 +24,6 @@ Original files (possibly after reorientation and avereging):
 
 *sub-Stevie_ses-01_space-native_T2w.nii.gz*
 
-|
 |
 
 If -pad is defined in command line (See `Commands <commands>`):
@@ -51,6 +47,7 @@ Original files in stereo space:
 *sub-Stevie_ses-01_space-stereo_T2w.nii.gz*
 
 |
+
 After some preprocessing :
 
 *sub-Stevie_ses-01_space-stereo_desc-denoised_T1w.nii.gz*
@@ -62,7 +59,9 @@ After some preprocessing :
 *sub-Stevie_ses-01_space-stereo_desc-debiased_T2w.nii.gz*
 
 **NB:** Both denoise and debias are optional
+
 |
+
 Transformations:
 
 *sub-Stevie_ses-01_space-native_target-stereo_affine.txt*
@@ -91,6 +90,7 @@ Brainmasked files after T1*T2 Bias correction:
 
 *sub-Stevie_ses-01_space-native_desc-debiased_desc-brain_T1w.nii.gz*
 
+|
 
 Segmentated files as probability tisses:
 
@@ -106,6 +106,7 @@ Segmentated files as probability tisses:
 
 *sub-Stevie_ses-01_space-native_label-CSF_probseg.nii.gz*
 
+|
 
 Segmentated files as indexed tisses:
 
@@ -122,12 +123,13 @@ Segmented files in mrtrix format:
 
 *sub-Stevie_ses-01_space-native_desc-5tt_dseg.nii.gz*
 
+|
 
 White matter + Gray matter binary mask and corresponding mesh:
 
-* sub-Stevie_ses-01_space-stereo_desc-wmgm_mask.nii.gz*
+*sub-Stevie_ses-01_space-stereo_desc-wmgm_mask.nii.gz*
 
-* sub-Stevie_ses-01_space-native_desc-wmgm_mask.nii.gz*
+*sub-Stevie_ses-01_space-native_desc-wmgm_mask.nii.gz*
 
 *sub-Stevie_ses-01_desc-wmgm_mask.stl*