diff --git a/skullTo3d/pipelines/skull_pipe.py b/skullTo3d/pipelines/skull_pipe.py index 4056a43..8a8218a 100644 --- a/skullTo3d/pipelines/skull_pipe.py +++ b/skullTo3d/pipelines/skull_pipe.py @@ -845,6 +845,10 @@ def _create_fullskull_mask(name="fullskull_pipe", params={}, prefix=""): brainmask_binary, "out_file", brainmask_expand, "in_file") + fullskull_pipe.connect( + inputnode, ('indiv_params', parse_key, prefix + "brainmask_expand"), + brainmask_expand, "indiv_params") + # add masks fullskull_mask_add = pe.Node( interface=BinaryMaths(),