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Remove orphan functions and dead plotting/utility code#127

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ammarcsj merged 3 commits into
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remove_dead_code
May 25, 2026
Merged

Remove orphan functions and dead plotting/utility code#127
ammarcsj merged 3 commits into
mainfrom
remove_dead_code

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Summary

  • Deletes unused modules: outlier_scoring.py, diffresults_handling.py, phospho_inference.py
  • Removes dead functions from plotting modules (base_functions, classify, fcviz_medianref, multicond, pairwise, UI dashboard plots)
  • Removes dead utility and analysis functions across utils, diffquant, resources, norm, quant_reader

Notes

This is the first in a stack of PRs preparing the residual decorrelation feature. No functional changes.

ammarcsj and others added 3 commits May 25, 2026 10:05
…_inference)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@ammarcsj ammarcsj merged commit 42bd262 into main May 25, 2026
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