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Wire new aggregation features into cluster and pipeline#135

Merged
ammarcsj merged 5 commits into
add_quant_reader_and_table_updatesfrom
wire_new_aggregation_features
May 25, 2026
Merged

Wire new aggregation features into cluster and pipeline#135
ammarcsj merged 5 commits into
add_quant_reader_and_table_updatesfrom
wire_new_aggregation_features

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Summary

  • Updates cluster_utils.py and cluster_ions.py with new aggregation modes, fragment filtering, and decorrelation-aware Stouffer aggregation
  • Updates config/variables.py with new feature flags and setters
  • Wires ICC correction, variance predictor, residual decorrelation and intensity summarization into condpair_analysis.py and diff_analysis.py
  • Exposes all new parameters in run_pipeline.py and the dashboard UI
  • Updates PTM site mapping accordingly

Notes

Integration layer for the full stack. Stacked on #134.

Base automatically changed from add_residual_decorrelation to add_quant_reader_and_table_updates May 25, 2026 09:10
@ammarcsj ammarcsj merged commit 050d664 into add_quant_reader_and_table_updates May 25, 2026
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@ammarcsj ammarcsj deleted the wire_new_aggregation_features branch May 25, 2026 09:11
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