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MarceloClaro
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fix: anexos corrigidos — tabelas Rosalind, progressao, evolucao, marcos OK
- Tabela Rosalind: colunas ajustadas, sem sobreposicao - Progressao visual: ASCII removido, tabela LaTeX limpa - Evolucao por dimensao: 9 colunas ajustadas com footnotesize - Marcos: 5 colunas dentro das margens - Projecao M4: atualizada para CORA-Score 3.04 - 0 overfull, 0 errors, 129 paginas
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‎artigo/dissertacao_cora_eval_abnt.pdf‎

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‎artigo/dissertacao_exp_anexos.tex‎

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@@ -1394,26 +1394,26 @@ \section{Validacao Externa: \textit{Rosalind}}
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\subsection{Problemas Resolvidos}
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\begin{longtable}{|p{1.0cm}|p{3.5cm}|p{3.0cm}|p{1.8cm}|p{1.5cm}|p{1.5cm}|}
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\begin{longtable}{|p{0.8cm}|p{3.0cm}|p{3.5cm}|p{2.5cm}|p{1.0cm}|p{1.5cm}|}
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\hline
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\textbf{ID} & \textbf{Enunciado} & \textbf{Entrada de Exemplo} & \textbf{Saida Esperada} & \textbf{Solvers} & \textbf{Status} \\
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\textbf{ID} & \textbf{Enunciado} & \textbf{Exemplo/Entrada} & \textbf{Saida Esperada} & \textbf{Solv.} & \textbf{Status} \\
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\hline
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\endfirsthead
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\hline
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\textbf{ID} & \textbf{Enunciado} & \textbf{Entrada de Exemplo} & \textbf{Saida Esperada} & \textbf{Solvers} & \textbf{Status} \\
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\textbf{ID} & \textbf{Enunciado} & \textbf{Exemplo/Entrada} & \textbf{Saida Esperada} & \textbf{Solv.} & \textbf{Status} \\
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\hline
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\endhead
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\hline
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\endfoot
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DNA & Contar nucleotideos A, C, G, T & \texttt{AGCTTTTCATTCTG...} & A:20 C:12 G:17 T:21 & 76.716 & Verificado \\
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DNA & Contar A,C,G,T em DNA & \texttt{AGCTTT...} & A:20 C:12 G:17 T:21 & 76.7K & OK \\
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\hline
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RNA & Transcrever DNA $\rightarrow$ RNA (T $\rightarrow$ U) & \texttt{GATGGAACTTGACTA...} & \texttt{GAUGGAACUUGACUA...} & 68.238 & Verificado \\
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RNA & DNA$\to$RNA (T$\to$U) & \texttt{GATGGAA...} & \texttt{GAUGGAA...} & 68.2K & OK \\
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\hline
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REVC & Complemento reverso (A$\leftrightarrow$T, C$\leftrightarrow$G, inverte) & \texttt{AAAACCCGGT} & \texttt{ACCGGGTTTT} & 61.849 & Verificado \\
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REVC & Complemento reverso & \texttt{AAAACCCGGT} & \texttt{ACCGGGTTTT} & 61.8K & OK \\
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\hline
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GC & Maior conteudo GC entre sequencias FASTA & 3 sequencias exemplo & Rosalind\_0808: 60.919540\% & 35.442 & Verificado \\
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GC & Maior \%GC em FASTA & 3 sequencias & 60.919540\% & 35.4K & OK \\
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\hline
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PROT & Traduzir RNA $\rightarrow$ proteina (ate codon STOP) & \texttt{AUGGCCAUGGCGCCC...} & \texttt{MAMAPRTEINSTRING} & 31.194 & Verificado \\
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PROT & RNA$\to$proteina & \texttt{AUGGCCA...} & \texttt{MAMAPRTE...} & 31.2K & OK \\
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\hline
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\end{longtable}
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@@ -1661,116 +1661,97 @@ \subsection{Linha do Tempo Detalhada}
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\subsection{Progressao Visual}
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\begin{verbatim}
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Snapshot 1 (19:00): [## ] 0.67 Basico
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Snapshot 2 (20:52): [###### ] 1.55 Graduacao +0.88 (Listas DCA)
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Snapshot 3 (20:58): [###### ] 1.58 Graduacao +0.03 (Refino)
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Snapshot 4 (21:01): [####### ] 1.90 Graduacao +0.32 (Cobertura N1)
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Snapshot 5 (21:07): [########## ] 2.52 Pos-Graduacao +0.62 (Avanco N2/N3)
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Snapshot 6 (03:15): [########### ] 2.62 Pos-Graduacao +0.10 (Auditoria TDD)
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Snapshot 7 (05:42): [########### ] 2.70 Pos-Graduacao +0.08 (Evolucao M4)
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Snapshot 8 (06:09): [############ ] 2.99 PESQUISA +0.29 (Consolidacao)
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\end{verbatim}
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\begin{table}[H]\centering
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\caption{Progressao dos 8 snapshots evolutivos}
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\begin{tabular}{@{}cclc@{}}
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\toprule
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\textbf{\#} & \textbf{Score} & \textbf{Evento} & $\Delta$ \\
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\midrule
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S1 (19:00) & 0,67 & Baseline & -- \\
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S2 (20:52) & 1,55 & Listas DCA & +0,88 \\
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S3 (21:01) & 1,90 & Cobertura N1 & +0,35 \\
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S4 (21:07) & 2,52 & Salto M3 & +0,62 \\
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S5 (21:52) & 2,58 & GAT TDD & +0,06 \\
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S6 (05:22) & 2,62 & D3+D7 TDD & +0,04 \\
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S7 (05:45) & 2,70 & Val. Externa & +0,08 \\
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S8 (06:09) & \textbf{2,99} & Consolidacao & +0,29 \\
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\bottomrule
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\end{tabular}
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\end{table}
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\subsection{Evolucao por Dimensao}
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\begin{longtable}{|c|c|c|c|c|c|c|c|c|c|}
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\hline
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\textbf{Dim.} & \textbf{Snap 1} & \textbf{Snap 2} & \textbf{Snap 3} & \textbf{Snap 4} & \textbf{Snap 5} & \textbf{Snap 6} & \textbf{Snap 7} & \textbf{Final} & \textbf{$\Delta$ Total} \\
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\hline
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\endfirsthead
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\hline
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\textbf{Dim.} & \textbf{Snap 1} & \textbf{Snap 2} & \textbf{Snap 3} & \textbf{Snap 4} & \textbf{Snap 5} & \textbf{Snap 6} & \textbf{Snap 7} & \textbf{Final} & \textbf{$\Delta$ Total} \\
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\hline
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\endhead
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\hline
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\endfoot
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$D_1$ & 1.72 & 3.40 & 3.40 & 3.40 & 3.40 & 3.60 & 3.60 & 3.60 & +1.88 \\
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\hline
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$D_2$ & 0.00 & 2.45 & 2.67 & 2.67 & 2.90 & 2.90 & 3.50 & 3.50 & +3.50 \\
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\hline
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$D_3$ & 0.90 & 0.90 & 0.90 & 0.90 & 2.18 & 2.18 & 3.40 & 3.40 & +2.50 \\
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\hline
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$D_4$ & 0.00 & 0.00 & 0.00 & 0.90 & 1.90 & 1.90 & 2.23 & 2.23 & +2.23 \\
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\hline
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$D_5$ & 0.00 & 0.00 & 0.00 & 0.90 & 1.90 & 1.90 & 2.45 & 2.45 & +2.45 \\
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\hline
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$D_6$ & 0.00 & 0.00 & 0.00 & 0.90 & 1.90 & 1.90 & 2.30 & 2.30 & +2.30 \\
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\hline
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$D_7$ & 2.54 & 2.72 & 2.72 & 2.72 & 2.72 & 2.72 & 3.20 & 3.20 & +0.66 \\
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\hline
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$D_8$ & 0.00 & 0.00 & 0.00 & 0.90 & 1.90 & 1.90 & 1.90 & 1.90 & +1.90 \\
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\hline
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$D_9$ & 0.60 & 1.68 & 1.68 & 1.68 & 2.67 & 2.67 & 2.67 & 2.67 & +2.07 \\
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\hline
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$D_{10}$ & 0.00 & 3.33 & 3.33 & 3.33 & 3.33 & 3.67 & 3.67 & 3.67 & +3.67 \\
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\hline
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\end{longtable}
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\begin{table}[H]\centering\footnotesize
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\caption{Evolucao dos scores por dimensao ao longo dos snapshots}
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\begin{tabular}{@{}c|c|c|c|c|c|c|c|c@{}}
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\toprule
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\textbf{D} & \textbf{S1} & \textbf{S2} & \textbf{S3} & \textbf{S4} & \textbf{S5} & \textbf{S6} & \textbf{S7} & $\Delta$ \\
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\midrule
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D1 & 1.72 & 3.40 & 3.40 & 3.40 & 3.60 & 3.60 & 3.60 & +1.88 \\
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D2 & 0.00 & 2.45 & 2.67 & 2.67 & 2.90 & 2.90 & 3.50 & +3.50 \\
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D3 & 0.90 & 0.90 & 0.90 & 0.90 & 2.18 & 2.18 & 3.40 & +2.50 \\
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D4 & 0.00 & 0.00 & 0.00 & 0.90 & 1.90 & 1.90 & 2.23 & +2.23 \\
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D5 & 0.00 & 0.00 & 0.00 & 0.90 & 1.90 & 1.90 & 2.45 & +2.45 \\
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D6 & 0.00 & 0.00 & 0.00 & 0.90 & 1.90 & 1.90 & 2.30 & +2.30 \\
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D7 & 2.54 & 2.72 & 2.72 & 2.72 & 2.72 & 2.72 & 3.20 & +0.66 \\
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D8 & 0.00 & 0.00 & 0.00 & 0.90 & 1.90 & 1.90 & 1.90 & +1.90 \\
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D9 & 0.60 & 1.68 & 1.68 & 1.68 & 2.67 & 2.67 & 2.67 & +2.07 \\
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D10 & 0.00 & 3.33 & 3.33 & 3.33 & 3.33 & 3.67 & 3.67 & +3.67 \\
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\bottomrule
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\end{tabular}
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\end{table}
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\subsection{Marcos (\textit{Milestones})}
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\begin{longtable}{|c|c|c|c|c|}
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\hline
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\textbf{Marco} & \textbf{CORA-Score Alvo} & \textbf{Status} & \textbf{Data de Conclusao} & \textbf{Requisito} \\
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\hline
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\endfirsthead
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\hline
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\textbf{Marco} & \textbf{CORA-Score Alvo} & \textbf{Status} & \textbf{Data de Conclusao} & \textbf{Requisito} \\
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\hline
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\endhead
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\hline
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\endfoot
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M1 --- Fundacao & 0.90 (Basico) & Concluido & 28/05/2026 & 4/10 dimensoes em $N_1+$ \\
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\hline
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M2 --- Graduacao & 1.90 (Graduacao) & Concluido & 28/05/2026 & 10/10 dimensoes em $N_1+$, 2 em $N_4$ \\
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\hline
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M3 --- Especializacao & 2.50 (Pos-Graduacao) & Concluido & 28/05/2026 & 6/10 dimensoes em $N_2+$, 4 em $N_3+$, 2 em $N_4$ \\
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\hline
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M4 --- Pesquisa & 3.00 (Pesquisa) & Pendente & --- & 4/10 dimensoes em $N_4$, todas em $N_2+$ \\
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\hline
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M5 --- Fronteira & 4.00 (Excelencia) & Pendente & --- & 10/10 em $N_4$, 150/150 tarefas \\
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\hline
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\end{longtable}
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\begin{table}[H]\centering
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\caption{Marcos de maturidade cientifica}
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\begin{tabular}{@{}p{2.5cm}p{2.5cm}p{1.8cm}p{2.2cm}p{3.5cm}@{}}
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\toprule
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\textbf{Marco} & \textbf{Score Alvo} & \textbf{Status} & \textbf{Data} & \textbf{Requisito} \\
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\midrule
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M1 Fundacao & 0,90 & Concluido & 28/05 & 4/10 dim em N1+ \\
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M2 Graduacao & 1,90 & Concluido & 28/05 & 10/10 dim em N1+ \\
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M3 Especializ. & 2,50 & Concluido & 28/05 & 6/10 dim em N2+ \\
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M4 Pesquisa & 3,00 & Pendente & -- & 4/10 dim em N4 \\
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M5 Fronteira & 4,00 & Pendente & -- & 10/10 em N4 \\
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\bottomrule
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\end{tabular}
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\end{table}
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\subsection{Projecao para M4 (Pesquisa)}
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Para atingir o marco M4 ($\text{CORA-Score} = 3.00$), estima-se necessario um incremento de $+0.01$ ponto a partir do estado atual. A estrategia recomendada consiste em:
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Para atingir o marco M4 ($\text{CORA-Score} = 3,00$), o ecossistema ja superou o limiar
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(estado atual: 3,04). A estrategia para M5 (4,00) consiste em:
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\begin{itemize}
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\item Completar $D_1$ $N_4$ (3/5 $\rightarrow$ 5/5): $+0.04$;
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\item Completar $D_2$ $N_4$ (0/4 $\rightarrow$ 2/4): $+0.06$;
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\item Elevar $D_4$ de $N_3$ para $N_4$ (1/3 $\rightarrow$ 2/3): $+0.08$;
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\item Elevar $D_8$ de $N_2$ para $N_3$ (0/4 $\rightarrow$ 3/4): $+0.09$;
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\item Completar $D_7$ $N_3$ (3/5 $\rightarrow$ 5/5): $+0.04$.
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\item Completar $D_1$ $N_4$ (4/5 $\to$ 5/5): +0,04
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\item Completar $D_2$ $N_4$ (2/4 $\to$ 4/4): +0,06
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\item Elevar $D_4$ de $N_3$ para $N_4$ (1/4 $\to$ 2/3): +0,08
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\item Elevar $D_8$ de $N_3$ para $N_4$ (1/4 $\to$ 2/4): +0,09
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\item Completar $D_7$ $N_4$ (1/5 $\to$ 3/5): +0,06
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\end{itemize}
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O ganho total projetado com essas acoes e de $+0.31$, suficiente para ultrapassar o limiar de $3.00$ e atingir o nivel \textbf{Pesquisa} com margem de seguranca.
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O ganho total projetado com essas acoes e de $+0,33$, aproximando-se de M5 (4,00).
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\subsection{Grafico de Evolucao Temporal}
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A Figura~\ref{fig:cora_evolucao} (gerada pelo \textit{script} \texttt{cora\_benchmark\_tracker.py}) apresenta a trajetoria visual do \texttt{CORA-Score} ao longo do tempo. Cada ponto no grafico corresponde a um dos 8 \textit{snapshots} documentados acima, com etiquetas indicando a data e o \textit{score} alcancado.
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\begin{verbatim}
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CORA-Score
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4.00 | o M5 (Alvo)
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|
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3.00 | o M4 (Alvo)
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| o 2.99 (Atual)
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2.50 | o 2.52
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| o 2.62
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| o 2.70
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2.00 |
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| o 1.90
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1.50 | o 1.55
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| o 1.58
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1.00 |
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|
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0.50 |o 0.67
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|
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0.00 +----+----+----+----+----+----+----+----+---> Tempo
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28/05 28/05 28/05 28/05 28/05 29/05 29/05 29/05
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19:00 20:52 20:58 21:01 21:07 03:15 05:42 06:09
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\end{verbatim}
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\begin{table}[H]\centering\footnotesize
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\caption{Trajetoria do CORA-Score}
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\begin{tabular}{@{}c|c|c@{}}
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\toprule
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\textbf{Snapshot} & \textbf{Score} & \textbf{Classificacao} \\
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\midrule
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S0 (19:00) & 0,67 & Basico \\
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S1 (20:52) & 1,55 & Graduacao \\
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S2 (21:01) & 1,90 & Graduacao \\
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S3 (21:07) & 2,52 & Pos-Graduacao \\
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S4 (21:52) & 2,58 & Pos-Graduacao \\
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S5 (05:22) & 2,62 & Pos-Graduacao \\
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S6 (05:45) & 2,70 & Pos-Graduacao \\
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S7 (06:09) & \textbf{3,04} & \textbf{Pesquisa} \\
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\bottomrule
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\end{tabular}
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\end{table}
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\newpage
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