Updated links to point to Marine Scotland Science

grwhumphries · grwhumphries · commit c3f08337f989 · 2025-07-11T16:20:14.000+01:00
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
@@ -4,12 +4,12 @@
 
 Thanks for considering contributing to stochLAB! The resources in this tool will be used for assessing impacts of offshore turbines on marine birds in order to help balance the trade-offs between conservation and climate change mitigation. 
 
-[repo]: https://github.com/HiDef-Aerial-Surveying/stochLAB
-[issues]: https://github.com/HiDef-Aerial-Surveying/stochLAB/issues
-[new_issue]: https://github.com/HiDef-Aerial-Surveying/stochLAB/issues/new
-[website]: https://hidef-aerial-surveying.github.io/stochLAB
-[citation]: https://hidef-aerial-surveying.github.io/stochLAB/authors.html
-[email]: mailto:grant.humphries@hidefsurveying.co.uk
+[repo]: https://github.com/MarineScotlandScience/stochLAB
+[issues]: https://github.com/MarineScotlandScience/stochLAB/issues
+[new_issue]: https://github.com/MarineScotlandScience/stochLAB/issues/new
+[website]: https://marinescotlandscience.github.io/stochLAB
+[citation]: https://marinescotlandscience.github.io/stochLAB/authors.html
+[email]: mailto:grwhumphries@blackbawks.net
 
 ## Code of conduct
 
diff --git a/NEWS.md b/NEWS.md
@@ -1,4 +1,5 @@
 # stochLAB 1.1.3
+* Updated links to point to Marine Scotland Science
 
 # stochLAB 1.1.2
 
diff --git a/R/stochLAB.R b/R/stochLAB.R
@@ -97,8 +97,8 @@
 #'
 #' @seealso
 #' Useful links:
-#' * <https://github.com/HiDef-Aerial-Surveying/stochLAB>
-#' * Report bugs at <https://github.com/HiDef-Aerial-Surveying/stochLAB/issues>
+#' * <https://github.com/MarineScotlandScience/stochLAB>
+#' * Report bugs at <https://github.com/MarineScotlandScience/stochLAB/issues>
 
 
 
diff --git a/README.Rmd b/README.Rmd
@@ -20,10 +20,10 @@ knitr::opts_chunk$set(
 
 <!-- badges: start -->
 
-[![test-coverage](https://github.com/HiDef-Aerial-Surveying/stochLAB/actions/workflows/test-coverage.yaml/badge.svg)](https://github.com/HiDef-Aerial-Surveying/stochLAB/actions/workflows/test-coverage.yaml)
-[![pkgdown](https://github.com/HiDef-Aerial-Surveying/stochLAB/actions/workflows/pkgdown.yaml/badge.svg)](https://github.com/HiDef-Aerial-Surveying/stochLAB/actions/workflows/pkgdown.yaml)
-[![R-CMD-check](https://github.com/HiDef-Aerial-Surveying/stochLAB/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/HiDef-Aerial-Surveying/stochLAB/actions/workflows/R-CMD-check.yaml)
-[![pkgcheck](https://github.com/HiDef-Aerial-Surveying/stochLAB/actions/workflows/pkgcheck.yaml/badge.svg)](https://github.com/HiDef-Aerial-Surveying/stochLAB/actions/workflows/pkgcheck.yaml)
+[![test-coverage](https://github.com/MarineScotlandScience/stochLAB/actions/workflows/test-coverage.yaml/badge.svg)](https://github.com/MarineScotlandScience/stochLAB/actions/workflows/test-coverage.yaml)
+[![pkgdown](https://github.com/MarineScotlandScience/stochLAB/actions/workflows/pkgdown.yaml/badge.svg)](https://github.com/MarineScotlandScience/stochLAB/actions/workflows/pkgdown.yaml)
+[![R-CMD-check](https://github.com/MarineScotlandScience/stochLAB/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/MarineScotlandScience/stochLAB/actions/workflows/R-CMD-check.yaml)
+[![pkgcheck](https://github.com/MarineScotlandScience/stochLAB/actions/workflows/pkgcheck.yaml/badge.svg)](https://github.com/MarineScotlandScience/stochLAB/actions/workflows/pkgcheck.yaml)
 [![Status at rOpenSci Software Peer
 Review](https://badges.ropensci.org/551_status.svg)](https://github.com/ropensci/software-review/issues/551)
 
@@ -79,7 +79,7 @@ You can install the development version with:
 
 ``` r
 # install.packages("devtools")
-devtools::install_github("HiDef-Aerial-Surveying/stochLAB")
+devtools::install_github("MarineScotlandScience/stochLAB")
 ```
 
 This package depends on the following packages, which should be installed
@@ -90,7 +90,7 @@ automatically:
 ## Bug reports
 
 To report any bugs, please log an
-[ISSUE](https://github.com/HiDef-Aerial-Surveying/stochLAB/issues)
+[ISSUE](https://github.com/MarineScotlandScience/stochLAB/issues)
 
 ## Input parameters
 
diff --git a/README.md b/README.md
diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -1,10 +1,10 @@
-url: https://hidef-aerial-surveying.github.io/stochLAB/
+url: https://marinescotlandscience.github.io/stochLAB/
 template:
   bootstrap: 5
 
 authors:
-  HiDef:
-    href: "https://www.hidefsurveying.co.uk/"
-    html: "<img src='https://github.com/HiDef-Aerial-Surveying.png' alt='HiDef surveying' width=72>"
+  Black Bawks:
+    href: "https://www.blackbawks.net/"
+    html: "<img src='https://github.com/blackbawks.png' alt='Black Bawks' width=72>"
   sidebar:
     roles: [cre, aut, fnd, cph]
diff --git a/codemeta.json b/codemeta.json
@@ -4,7 +4,7 @@
   "identifier": "stochLAB",
   "description": "Tool for running Collision Risk Models for seabirds on offshore wind farms.",
   "name": "stochLAB: Stochastic Collision Risk Model",
-  "issueTracker": "www.github.com/HiDef-Aerial-Surveying/stochLAB/issues",
+  "issueTracker": "www.github.com/MarineScotlandScience/stochLAB/issues",
   "license": "https://spdx.org/licenses/GPL-3.0",
   "version": "0.3.1",
   "programmingLanguage": {
@@ -18,7 +18,7 @@
       "@type": "Person",
       "givenName": "Grant",
       "familyName": "Humphries",
-      "email": "grant.humphries@hidefsurveying.co.uk"
+      "email": "grwhumphries@blackbawks.net"
     },
     {
       "@type": "Person",
@@ -34,7 +34,7 @@
     },
     {
       "@type": "Organization",
-      "name": "HiDef"
+      "name": "Black Bawks Data Science"
     },
     {
       "@type": "Organization",
@@ -52,7 +52,7 @@
       "@type": "Person",
       "givenName": "Grant",
       "familyName": "Humphries",
-      "email": "grant.humphries@hidefsurveying.co.uk"
+      "email": "grwhumphries@blackbawks.net"
     }
   ],
   "softwareSuggestions": [
@@ -280,10 +280,10 @@
         }
       ],
       "name": "Estimating bird collisions at offshore windfarms with {stochLAB}",
-      "url": "https://hidef-aerial-surveying.github.io/stochLAB"
+      "url": "https://marinescotlandscience.github.io/stochLAB"
     }
   ],
-  "codeRepository": "https://github.com/HiDef-Aerial-Surveying/stochLAB",
-  "readme": "https://github.com/HiDef-Aerial-Surveying/stochLAB/blob/master/README.md",
+  "codeRepository": "https://github.com/MarineScotlandScience/stochLAB",
+  "readme": "https://github.com/MarineScotlandScience/stochLAB/blob/master/README.md",
   "keywords": ["collision-risk", "offshore-wind", "seabirds", "migratoryspecies"]
 }
diff --git a/inst/CITATION b/inst/CITATION
@@ -8,10 +8,10 @@ citEntry(entry = "Manual",
                    as.person("Elizabeth Masden")),
   institution  = "Marine Scotland Science",
   year         = "2022",
-  url          = "https://hidef-aerial-surveying.github.io/stochLAB/",
+  url          = "https://marinescotlandscience.github.io/stochLAB/",
 
   textVersion  =
   paste("Bruno Caneco, Grant Humphries, Aonghais Cook, Elizabeth Masden (2022).",
         "Estimating bird collisions at offshore windfarms with stochLAB",
-        "URL https://hidef-aerial-surveying.github.io/stochLAB/")
+        "URL https://marinescotlandscience.github.io/stochLAB/")
 )
diff --git a/vignettes/Running_stochLAB.Rmd b/vignettes/Running_stochLAB.Rmd
@@ -55,7 +55,7 @@ You can install the development version with:
 
 ```r
 # install.packages("devtools")
-devtools::install_github("HiDef-Aerial-Surveying/stochLAB")
+devtools::install_github("MarineScotlandScience/stochLAB")
 ```
 
 

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,5 @@`
`1`	`1`	`# stochLAB 1.1.3`
	`2`	`+* Updated links to point to Marine Scotland Science`
`2`	`3`
`3`	`4`	`# stochLAB 1.1.2`
`4`	`5`