minor version bump, NEWS update

Author: MikeDMorgan

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: miloR
 Type: Package
 Title: Differential neighbourhood abundance testing on a graph
-Version: 2.3.1
+Version: 2.3.2
 Authors@R:
     c(person("Mike", "Morgan", role=c("aut", "cre"), email="michael.morgan@abdn.ac.uk",
      comment=c(ORCID="0000-0003-0757-0711")),

NEWS.md

@@ -1,4 +1,7 @@
-# 2.0.X (2024-10-30)
+# 2.3.X (2024-11-20)
++ Allow groupNhoods() to retain original behaviour or force intuitive grouping such that no nhood group has discordant LFCs
+
+# 2.2.0 (2024-10-30)
 + Warning on GLMM if glmm.solver not set
 + Bug fix in model contrasts vignette with multiple contrasts
 + testNhoods will error if N<60 and using GLMM - introduce force=TRUE to override (with a warning)

R/glmm.R

@@ -674,6 +674,7 @@ function_jac <- function(x, coeff.mat, mint, cint, G_inv, random.levels) {
     # check for singularity
     lr.tosolve <- LowerRight
     lr.rcond <- rcond(lr.tosolve)
+
     if(lr.rcond <= 1e-9){
         warning("Coefficient submatrix is nearly singular - using pseudoinverse")
         lr.inv <- pinv(LowerRight)