chore(bokeh): update quality score 89 and review feedback for column-stratigraphic

Author: github-actions[bot]

plots/column-stratigraphic/implementations/bokeh.py

@@ -1,7 +1,7 @@
 """ pyplots.ai
 column-stratigraphic: Stratigraphic Column with Lithology Patterns
 Library: bokeh 3.9.0 | Python 3.14.3
-Quality: 88/100 | Created: 2026-03-15
+Quality: 89/100 | Created: 2026-03-15
 """
 
 from bokeh.io import export_png

plots/column-stratigraphic/metadata/bokeh.yaml

@@ -1,7 +1,7 @@
 library: bokeh
 specification_id: column-stratigraphic
 created: '2026-03-15T22:55:12Z'
-updated: '2026-03-15T23:14:59Z'
+updated: '2026-03-15T23:23:49Z'
 generated_by: claude-opus-4-5-20251101
 workflow_run: 23121198781
 issue: 4573
@@ -10,107 +10,113 @@ library_version: 3.9.0
 preview_url: https://storage.googleapis.com/pyplots-images/plots/column-stratigraphic/bokeh/plot.png
 preview_thumb: https://storage.googleapis.com/pyplots-images/plots/column-stratigraphic/bokeh/plot_thumb.png
 preview_html: https://storage.googleapis.com/pyplots-images/plots/column-stratigraphic/bokeh/plot.html
-quality_score: 88
+quality_score: 89
 review:
   strengths:
-  - Excellent spec compliance — all required features faithfully implemented with
-    5 distinct lithology patterns and proper geological conventions
-  - K-Pg boundary annotation adds strong data storytelling with red dashed line and
-    bold label
-  - 'Good use of Bokeh-specific features: HoverTool tooltips, hatch patterns, Span,
-    dual PNG/HTML export'
-  - Clean, well-organized code with good typography hierarchy
-  - Colorblind-safe, geology-appropriate earth-tone palette
+  - Excellent visual design with domain-appropriate color palette and redundant hatch
+    pattern encoding for accessibility
+  - Strong data storytelling through the K-Pg boundary focal point and age bracket
+    grouping
+  - Full spec compliance with all required features implemented
+  - Good use of Bokeh-specific features (hatch patterns, HoverTool, Span, dual HTML/PNG
+    output)
+  - Clean typography hierarchy with 4 distinct size levels
+  - Professional visual refinement (subtle grid, removed outline, hidden x-axis)
   weaknesses:
-  - Horizontal canvas utilization could be improved — significant empty space between
-    formation labels and legend
-  - Boundary depth labels (13pt) are noticeably smaller than other text elements
-  - Hatch patterns use Bokeh built-in defaults rather than closer approximations of
-    FGDC geological symbols
+  - 'Geological age ordering is reversed: Eocene (younger) appears below Late Cretaceous
+    (older) in the depth column, and Leadville Fm is assigned incorrect age'
+  - Boundary depth labels at 13pt are noticeably smaller than other text elements
+  - Some horizontal space wasted to the right of formation labels
   image_description: 'The plot displays a vertical stratigraphic column spanning 0–200m
     depth (increasing downward). Ten geological layers are rendered as wide rectangular
     blocks, each filled with a distinct color and hatch pattern: Sandstone (warm wheat
     with dot pattern), Shale (gray with horizontal dashes), Limestone (light blue
-    with plus/cross pattern), Siltstone (olive green with diagonal hatching), and
+    with cross/plus pattern), Siltstone (olive green with diagonal hatching), and
     Conglomerate (orange with circle pattern). A prominent red dashed line marks the
-    K-Pg Boundary (~66 Ma) at 88m depth with a bold red label. Formation names (Dakota
-    Fm, Mancos Fm, Niobrara Fm, Pierre Fm, Fox Hills Fm, Dawson Fm, Green River Fm,
-    Leadville Fm, Wasatch Fm, Uinta Fm) are labeled on the right. Age brackets (Late
-    Cretaceous, Paleocene, Eocene) with bracket lines appear on the left. Small depth
-    labels mark each layer boundary. The title reads "column-stratigraphic · bokeh
-    · pyplots.ai" in the upper left. A lithology legend with all 5 rock types sits
-    in the upper right. The y-axis is labeled "Depth (m)".'
+    K-Pg Boundary (~66 Ma) at 88m depth with a bold red label on a white background.
+    Formation names (Dakota Fm, Mancos Fm, Niobrara Fm, Pierre Fm, Fox Hills Fm, Dawson
+    Fm, Green River Fm, Leadville Fm, Wasatch Fm, Uinta Fm) are labeled in bold on
+    the right side. Age brackets with vertical bracket lines (Late Cretaceous, Paleocene,
+    Eocene) appear on the left in italic. Small gray depth labels mark each layer
+    boundary. The title reads "column-stratigraphic · bokeh · pyplots.ai" in the upper
+    left. A lithology legend titled "Lithology" with all 5 rock types sits in the
+    upper right on a cream background. The y-axis is labeled "Depth (m)" in bold.
+    The background is a warm off-white, grid is very subtle dashed lines, x-axis is
+    hidden, and the outline is removed.'
   criteria_checklist:
     visual_quality:
-      score: 27
+      score: 28
       max: 30
       items:
       - id: VQ-01
         name: Text Legibility
         score: 7
         max: 8
         passed: true
-        comment: All font sizes explicitly set (title 36pt, axis label 28pt, ticks
-          22pt, formation 19pt, age 19pt). Boundary depth labels at 13pt are readable
-          but noticeably smaller.
+        comment: All font sizes explicitly set (title 36pt, axis 28pt, ticks 22pt,
+          labels 19pt, legend 20-22pt). Boundary depth labels at 13pt are smaller
+          but readable.
       - id: VQ-02
         name: No Overlap
         score: 6
         max: 6
         passed: true
-        comment: No overlapping text. Formation labels, age labels, and depth marks
+        comment: No overlapping text. Formation labels, age brackets, depth marks
           all well-separated.
       - id: VQ-03
         name: Element Visibility
         score: 6
         max: 6
         passed: true
-        comment: All rectangular layers clearly visible with distinct colors and hatch
-          patterns.
+        comment: All layers clearly visible with distinct colors and hatch patterns.
+          Good 2px line widths on boundaries.
       - id: VQ-04
         name: Color Accessibility
         score: 4
         max: 4
         passed: true
-        comment: 'Colorblind-safe palette: wheat, gray, blue, olive green, orange.'
+        comment: Colorblind-safe palette (wheat, gray, blue, olive, orange) with redundant
+          hatch pattern encoding.
       - id: VQ-05
         name: Layout & Canvas
-        score: 2
+        score: 3
         max: 4
-        passed: false
-        comment: Significant horizontal space wasted between formation labels and
-          legend. Column is narrow relative to canvas width.
+        passed: true
+        comment: Good vertical utilization. Some wasted horizontal space between formation
+          labels and legend.
       - id: VQ-06
         name: Axis Labels & Title
         score: 2
         max: 2
         passed: true
         comment: Y-axis labeled Depth (m) with units. X-axis appropriately hidden.
+          Title follows convention.
     design_excellence:
-      score: 14
+      score: 16
       max: 20
       items:
       - id: DE-01
         name: Aesthetic Sophistication
-        score: 5
+        score: 6
         max: 8
         passed: true
-        comment: Earth-tone palette is geology-appropriate. Good typography hierarchy.
-          Above defaults but not publication-grade.
+        comment: Custom domain-appropriate palette, intentional typography hierarchy,
+          warm background, styled legend, K-Pg red accent. Above defaults but not
+          publication-perfect.
       - id: DE-02
         name: Visual Refinement
-        score: 4
+        score: 5
         max: 6
         passed: true
-        comment: Hidden x-axis, subtle grid (alpha 0.12, dashed), removed outline,
-          custom background. Good refinement.
+        comment: Outline removed, x-axis hidden, grid subtle (alpha 0.12 dashed),
+          minor ticks removed, softened axis colors, generous padding.
       - id: DE-03
         name: Data Storytelling
         score: 5
         max: 6
         passed: true
-        comment: K-Pg boundary creates clear focal point. Age brackets organize geological
-          timeline. Real formation names add context.
+        comment: K-Pg boundary creates strong focal point. Age brackets provide geological
+          narrative. Depth ticks guide viewer through sequence.
     spec_compliance:
       score: 15
       max: 15
@@ -120,51 +126,53 @@ review:
         score: 5
         max: 5
         passed: true
-        comment: Correct stratigraphic column with stacked rectangular layers and
-          lithology patterns.
+        comment: Correct vertical column with stacked rectangular blocks for geological
+          layers.
       - id: SC-02
         name: Required Features
         score: 4
         max: 4
         passed: true
-        comment: 'All spec features present: 5 lithology patterns, depth increasing
-          downward, formation names, age labels, depth scale.'
+        comment: 'All features: hatch patterns (5 types), formation names, age labels
+          with brackets, depth scale, layer boundaries.'
       - id: SC-03
         name: Data Mapping
         score: 3
         max: 3
         passed: true
-        comment: Depth correctly mapped to y-axis, layers stacked without gaps.
+        comment: Depth increases downward as specified. All 10 layers from 0-200m
+          displayed.
       - id: SC-04
         name: Title & Legend
         score: 3
         max: 3
         passed: true
-        comment: Title format correct. Legend titled Lithology with all 5 rock types.
+        comment: Title format correct. Legend with all 5 lithology types labeled.
     data_quality:
-      score: 14
+      score: 12
       max: 15
       items:
       - id: DQ-01
         name: Feature Coverage
-        score: 6
+        score: 5
         max: 6
         passed: true
-        comment: Shows 5 distinct lithologies, 10 layers, varying thicknesses, 3 geological
-          periods, K-Pg boundary.
+        comment: 5 lithology types, 10 layers, varying thicknesses, 3 periods, K-Pg
+          boundary. Missing unconformity (optional).
       - id: DQ-02
         name: Realistic Context
-        score: 4
+        score: 3
         max: 5
-        passed: true
-        comment: Real Western US formation names and geological ages. Minor anachronism
-          with Leadville Fm age.
+        passed: false
+        comment: 'Real formation names but geological ages reversed: Eocene (younger)
+          deeper than Cretaceous (older). Leadville Fm age incorrect.'
       - id: DQ-03
         name: Appropriate Scale
         score: 4
         max: 4
         passed: true
-        comment: Depths 0-200m and thicknesses 8-28m are geologically plausible.
+        comment: Layer thicknesses 8-28m realistic. Total 200m sensible for stratigraphic
+          section.
     code_quality:
       score: 10
       max: 10
@@ -174,14 +182,14 @@ review:
         score: 3
         max: 3
         passed: true
-        comment: 'Clean linear flow: data, plot, annotations, save. No functions or
-          classes.'
+        comment: 'Flat script: imports, data, styles, plot, annotations, save. No
+          functions or classes.'
       - id: CQ-02
         name: Reproducibility
         score: 2
         max: 2
         passed: true
-        comment: All data deterministic (hardcoded layer definitions).
+        comment: Fully deterministic hardcoded data, no random elements.
       - id: CQ-03
         name: Clean Imports
         score: 2
@@ -193,13 +201,13 @@ review:
         score: 2
         max: 2
         passed: true
-        comment: Clean, well-organized code with appropriate loops. No fake functionality.
+        comment: Clean, well-organized code with logical sections. No fake UI elements.
       - id: CQ-05
         name: Output & API
         score: 1
         max: 1
         passed: true
-        comment: Saves as plot.png via export_png and plot.html. Current Bokeh API.
+        comment: Saves as plot.png and plot.html. Current Bokeh 3.9 API.
     library_mastery:
       score: 8
       max: 10
@@ -209,15 +217,15 @@ review:
         score: 4
         max: 5
         passed: true
-        comment: Uses ColumnDataSource, Range1d, Label, Legend/LegendItem, Span —
-          idiomatic Bokeh patterns.
+        comment: Good use of ColumnDataSource, figure with Range1d, rect glyphs with
+          hatch, Label/Span models, Legend with LegendItem, HoverTool.
       - id: LM-02
         name: Distinctive Features
         score: 4
         max: 5
         passed: true
-        comment: HoverTool with rich tooltips, hatch patterns, Span model, dual PNG/HTML
-          export — Bokeh-specific features.
+        comment: 'Bokeh-specific: native hatch patterns, HoverTool with tooltips,
+          Span model, dual PNG+HTML output, Legend model with custom styling.'
   verdict: REJECTED
 impl_tags:
   dependencies: []