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| 1 | +""" pyplots.ai |
| 2 | +pdp-basic: Partial Dependence Plot |
| 3 | +Library: highcharts unknown | Python 3.13.11 |
| 4 | +Quality: 91/100 | Created: 2025-12-31 |
| 5 | +""" |
| 6 | + |
| 7 | +import tempfile |
| 8 | +import time |
| 9 | +import urllib.request |
| 10 | +from pathlib import Path |
| 11 | + |
| 12 | +import numpy as np |
| 13 | +from highcharts_core.chart import Chart |
| 14 | +from highcharts_core.options import HighchartsOptions |
| 15 | +from highcharts_core.options.series.area import AreaRangeSeries, LineSeries |
| 16 | +from selenium import webdriver |
| 17 | +from selenium.webdriver.chrome.options import Options |
| 18 | +from sklearn.datasets import make_regression |
| 19 | +from sklearn.ensemble import GradientBoostingRegressor |
| 20 | +from sklearn.inspection import partial_dependence |
| 21 | + |
| 22 | + |
| 23 | +# Data - Train a GradientBoostingRegressor and compute partial dependence |
| 24 | +np.random.seed(42) |
| 25 | +X, y = make_regression(n_samples=500, n_features=5, n_informative=3, noise=20, random_state=42) |
| 26 | + |
| 27 | +# Train model |
| 28 | +model = GradientBoostingRegressor(n_estimators=100, max_depth=4, random_state=42) |
| 29 | +model.fit(X, y) |
| 30 | + |
| 31 | +# Compute partial dependence for feature 0 (most informative) |
| 32 | +feature_idx = 0 |
| 33 | +pd_results = partial_dependence(model, X, features=[feature_idx], kind="average", grid_resolution=80) |
| 34 | +feature_values = pd_results["grid_values"][0] |
| 35 | +avg_predictions = pd_results["average"][0] |
| 36 | + |
| 37 | +# Compute individual conditional expectations for confidence band |
| 38 | +individual_pd = partial_dependence(model, X, features=[feature_idx], kind="individual", grid_resolution=80) |
| 39 | +individual_preds = individual_pd["individual"][0] |
| 40 | + |
| 41 | +# Center at zero for easier interpretation |
| 42 | +avg_predictions = avg_predictions - np.mean(avg_predictions) |
| 43 | +individual_preds = individual_preds - np.mean(individual_preds, axis=1, keepdims=True) |
| 44 | + |
| 45 | +# Compute confidence intervals (5th and 95th percentile across samples) |
| 46 | +lower_bound = np.percentile(individual_preds, 5, axis=0) |
| 47 | +upper_bound = np.percentile(individual_preds, 95, axis=0) |
| 48 | + |
| 49 | +# Subsample training data for rug plot |
| 50 | +rug_sample_idx = np.random.choice(len(X), size=50, replace=False) |
| 51 | +rug_values = X[rug_sample_idx, feature_idx] |
| 52 | + |
| 53 | +# Create Highcharts chart |
| 54 | +chart = Chart(container="container") |
| 55 | +chart.options = HighchartsOptions() |
| 56 | + |
| 57 | +# Chart configuration |
| 58 | +chart.options.chart = {"type": "line", "width": 4800, "height": 2700, "backgroundColor": "#ffffff", "marginBottom": 200} |
| 59 | + |
| 60 | +# Title |
| 61 | +chart.options.title = { |
| 62 | + "text": "pdp-basic · highcharts · pyplots.ai", |
| 63 | + "style": {"fontSize": "48px", "fontWeight": "bold"}, |
| 64 | +} |
| 65 | + |
| 66 | +chart.options.subtitle = {"text": "Partial Dependence of Feature 0 on Model Predictions", "style": {"fontSize": "32px"}} |
| 67 | + |
| 68 | +# Axes |
| 69 | +chart.options.x_axis = { |
| 70 | + "title": {"text": "Feature 0 Value", "style": {"fontSize": "36px"}}, |
| 71 | + "labels": {"style": {"fontSize": "28px"}}, |
| 72 | + "tickInterval": 0.5, |
| 73 | + "gridLineWidth": 1, |
| 74 | + "gridLineColor": "rgba(0,0,0,0.1)", |
| 75 | + "plotLines": [ |
| 76 | + {"value": float(rug_values[i]), "width": 3, "color": "rgba(48,105,152,0.4)", "zIndex": 1} |
| 77 | + for i in range(len(rug_values)) |
| 78 | + ], |
| 79 | +} |
| 80 | + |
| 81 | +chart.options.y_axis = { |
| 82 | + "title": {"text": "Partial Dependence (centered)", "style": {"fontSize": "36px"}}, |
| 83 | + "labels": {"style": {"fontSize": "28px"}}, |
| 84 | + "gridLineWidth": 1, |
| 85 | + "gridLineColor": "rgba(0,0,0,0.15)", |
| 86 | + "plotLines": [{"value": 0, "width": 2, "color": "#888888", "dashStyle": "Dash", "zIndex": 2}], |
| 87 | +} |
| 88 | + |
| 89 | +# Legend |
| 90 | +chart.options.legend = { |
| 91 | + "enabled": True, |
| 92 | + "align": "right", |
| 93 | + "verticalAlign": "top", |
| 94 | + "layout": "vertical", |
| 95 | + "x": -50, |
| 96 | + "y": 100, |
| 97 | + "itemStyle": {"fontSize": "28px"}, |
| 98 | +} |
| 99 | + |
| 100 | +# Tooltip |
| 101 | +chart.options.tooltip = {"shared": True, "valueDecimals": 2, "style": {"fontSize": "24px"}} |
| 102 | + |
| 103 | +# Plot options |
| 104 | +chart.options.plot_options = { |
| 105 | + "series": {"animation": False}, |
| 106 | + "arearange": {"fillOpacity": 0.3, "lineWidth": 0}, |
| 107 | + "line": {"lineWidth": 5}, |
| 108 | +} |
| 109 | + |
| 110 | +# Add confidence band as arearange series |
| 111 | +confidence_data = [ |
| 112 | + [float(feature_values[i]), float(lower_bound[i]), float(upper_bound[i])] for i in range(len(feature_values)) |
| 113 | +] |
| 114 | + |
| 115 | +confidence_series = AreaRangeSeries() |
| 116 | +confidence_series.data = confidence_data |
| 117 | +confidence_series.name = "90% Confidence Interval" |
| 118 | +confidence_series.color = "rgba(48,105,152,0.25)" |
| 119 | +confidence_series.fill_opacity = 0.25 |
| 120 | +chart.add_series(confidence_series) |
| 121 | + |
| 122 | +# Add main PDP line |
| 123 | +pdp_data = [[float(feature_values[i]), float(avg_predictions[i])] for i in range(len(feature_values))] |
| 124 | + |
| 125 | +pdp_series = LineSeries() |
| 126 | +pdp_series.data = pdp_data |
| 127 | +pdp_series.name = "Partial Dependence" |
| 128 | +pdp_series.color = "#306998" # Python Blue |
| 129 | +pdp_series.marker = {"enabled": False} |
| 130 | +chart.add_series(pdp_series) |
| 131 | + |
| 132 | +# Export to PNG via Selenium |
| 133 | +highcharts_url = "https://code.highcharts.com/highcharts.js" |
| 134 | +with urllib.request.urlopen(highcharts_url, timeout=30) as response: |
| 135 | + highcharts_js = response.read().decode("utf-8") |
| 136 | + |
| 137 | +highcharts_more_url = "https://code.highcharts.com/highcharts-more.js" |
| 138 | +with urllib.request.urlopen(highcharts_more_url, timeout=30) as response: |
| 139 | + highcharts_more_js = response.read().decode("utf-8") |
| 140 | + |
| 141 | +html_str = chart.to_js_literal() |
| 142 | +html_content = f"""<!DOCTYPE html> |
| 143 | +<html> |
| 144 | +<head> |
| 145 | + <meta charset="utf-8"> |
| 146 | + <script>{highcharts_js}</script> |
| 147 | + <script>{highcharts_more_js}</script> |
| 148 | +</head> |
| 149 | +<body style="margin:0;"> |
| 150 | + <div id="container" style="width: 4800px; height: 2700px;"></div> |
| 151 | + <script>{html_str}</script> |
| 152 | +</body> |
| 153 | +</html>""" |
| 154 | + |
| 155 | +with tempfile.NamedTemporaryFile(mode="w", suffix=".html", delete=False, encoding="utf-8") as f: |
| 156 | + f.write(html_content) |
| 157 | + temp_path = f.name |
| 158 | + |
| 159 | +# Also save the HTML for interactive viewing |
| 160 | +with open("plot.html", "w", encoding="utf-8") as f: |
| 161 | + f.write(html_content) |
| 162 | + |
| 163 | +chrome_options = Options() |
| 164 | +chrome_options.add_argument("--headless") |
| 165 | +chrome_options.add_argument("--no-sandbox") |
| 166 | +chrome_options.add_argument("--disable-dev-shm-usage") |
| 167 | +chrome_options.add_argument("--disable-gpu") |
| 168 | +chrome_options.add_argument("--window-size=4800,2700") |
| 169 | + |
| 170 | +driver = webdriver.Chrome(options=chrome_options) |
| 171 | +driver.get(f"file://{temp_path}") |
| 172 | +time.sleep(5) |
| 173 | +driver.save_screenshot("plot.png") |
| 174 | +driver.quit() |
| 175 | + |
| 176 | +Path(temp_path).unlink() |
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