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| 1 | +"""pyplots.ai |
| 2 | +column-stratigraphic: Stratigraphic Column with Lithology Patterns |
| 3 | +Library: letsplot | Python 3.13 |
| 4 | +Quality: pending | Created: 2026-03-15 |
| 5 | +""" |
| 6 | +# ruff: noqa: F405 |
| 7 | + |
| 8 | +import os |
| 9 | +import shutil |
| 10 | + |
| 11 | +import pandas as pd |
| 12 | +from lets_plot import * # noqa: F403 |
| 13 | + |
| 14 | + |
| 15 | +LetsPlot.setup_html() |
| 16 | + |
| 17 | +# Data - synthetic sedimentary section with 10 layers (depth increasing downward) |
| 18 | +layers = pd.DataFrame( |
| 19 | + { |
| 20 | + "top": [0, 15, 35, 55, 80, 110, 135, 165, 195, 230], |
| 21 | + "bottom": [15, 35, 55, 80, 110, 135, 165, 195, 230, 260], |
| 22 | + "lithology": [ |
| 23 | + "Sandstone", |
| 24 | + "Shale", |
| 25 | + "Limestone", |
| 26 | + "Siltstone", |
| 27 | + "Sandstone", |
| 28 | + "Conglomerate", |
| 29 | + "Shale", |
| 30 | + "Limestone", |
| 31 | + "Siltstone", |
| 32 | + "Sandstone", |
| 33 | + ], |
| 34 | + "formation": [ |
| 35 | + "Basal Sand Fm", |
| 36 | + "Dark Shale Mbr", |
| 37 | + "Reef Limestone Fm", |
| 38 | + "Gray Silt Mbr", |
| 39 | + "Channel Sand Fm", |
| 40 | + "Gravel Bed Fm", |
| 41 | + "Marine Shale Fm", |
| 42 | + "Platform Carb Fm", |
| 43 | + "Tidal Flat Mbr", |
| 44 | + "Upper Sand Fm", |
| 45 | + ], |
| 46 | + "age": [ |
| 47 | + "Triassic", |
| 48 | + "Triassic", |
| 49 | + "Jurassic", |
| 50 | + "Jurassic", |
| 51 | + "Jurassic", |
| 52 | + "Cretaceous", |
| 53 | + "Cretaceous", |
| 54 | + "Cretaceous", |
| 55 | + "Paleogene", |
| 56 | + "Paleogene", |
| 57 | + ], |
| 58 | + } |
| 59 | +) |
| 60 | + |
| 61 | +layers["thickness"] = layers["bottom"] - layers["top"] |
| 62 | +layers["xmin"] = 0.0 |
| 63 | +layers["xmax"] = 1.0 |
| 64 | + |
| 65 | +# Lithology color palette (earthy geological tones) |
| 66 | +lithology_colors = { |
| 67 | + "Sandstone": "#F2CC6B", |
| 68 | + "Shale": "#8B8B8B", |
| 69 | + "Limestone": "#5B9BD5", |
| 70 | + "Siltstone": "#B5A48B", |
| 71 | + "Conglomerate": "#D4726A", |
| 72 | +} |
| 73 | +lithology_order = ["Sandstone", "Shale", "Limestone", "Siltstone", "Conglomerate"] |
| 74 | + |
| 75 | +# Build label data: formation names (right) + age labels (left) |
| 76 | +label_rows = [] |
| 77 | +for _, row in layers.iterrows(): |
| 78 | + mid_depth = (row["top"] + row["bottom"]) / 2 |
| 79 | + label_rows.append({"x": 1.12, "y": mid_depth, "label": row["formation"]}) |
| 80 | + |
| 81 | +age_spans = {"Triassic": (0, 35), "Jurassic": (35, 110), "Cretaceous": (110, 195), "Paleogene": (195, 260)} |
| 82 | +for age_name, (age_top, age_bottom) in age_spans.items(): |
| 83 | + label_rows.append({"x": -0.12, "y": (age_top + age_bottom) / 2, "label": age_name}) |
| 84 | + |
| 85 | +labels_df = pd.DataFrame(label_rows) |
| 86 | + |
| 87 | +# Age boundary dashed lines |
| 88 | +age_boundary_depths = [35, 110, 195] |
| 89 | +boundaries_df = pd.DataFrame( |
| 90 | + {"x": [-0.02] * 3, "y": age_boundary_depths, "xend": [1.02] * 3, "yend": age_boundary_depths} |
| 91 | +) |
| 92 | + |
| 93 | +# Plot |
| 94 | +plot = ( |
| 95 | + ggplot() |
| 96 | + + geom_rect( |
| 97 | + aes(xmin="xmin", xmax="xmax", ymin="top", ymax="bottom", fill="lithology"), |
| 98 | + data=layers, |
| 99 | + color="black", |
| 100 | + size=0.8, |
| 101 | + alpha=0.85, |
| 102 | + tooltips=layer_tooltips() |
| 103 | + .line("@lithology") |
| 104 | + .line("Depth: @top\u2013@bottom m") |
| 105 | + .line("Thickness: @thickness m") |
| 106 | + .line("Formation: @formation") |
| 107 | + .line("Age: @age"), |
| 108 | + ) |
| 109 | + + geom_segment( |
| 110 | + aes(x="x", y="y", xend="xend", yend="yend"), |
| 111 | + data=boundaries_df, |
| 112 | + linetype="dashed", |
| 113 | + color="#888888", |
| 114 | + size=0.7, |
| 115 | + show_legend=False, |
| 116 | + ) |
| 117 | + + geom_text(aes(x="x", y="y", label="label"), data=labels_df, size=10, color="#333333") |
| 118 | + + scale_fill_manual(values=lithology_colors, name="Lithology", limits=lithology_order) |
| 119 | + + scale_y_reverse() |
| 120 | + + scale_x_continuous(limits=[-0.35, 1.85]) |
| 121 | + + labs(title="column-stratigraphic \u00b7 letsplot \u00b7 pyplots.ai", y="Depth (m)", x="") |
| 122 | + + theme_minimal() |
| 123 | + + theme( |
| 124 | + plot_title=element_text(size=24, face="bold"), |
| 125 | + axis_title_y=element_text(size=20), |
| 126 | + axis_title_x=element_blank(), |
| 127 | + axis_text_y=element_text(size=16), |
| 128 | + axis_text_x=element_blank(), |
| 129 | + axis_ticks_x=element_blank(), |
| 130 | + legend_title=element_text(size=16, face="bold"), |
| 131 | + legend_text=element_text(size=14), |
| 132 | + legend_position="bottom", |
| 133 | + panel_grid_major_x=element_blank(), |
| 134 | + panel_grid_minor_x=element_blank(), |
| 135 | + panel_grid_major_y=element_line(size=0.3, color="#dddddd"), |
| 136 | + panel_grid_minor_y=element_blank(), |
| 137 | + ) |
| 138 | + + ggsize(1600, 900) |
| 139 | +) |
| 140 | + |
| 141 | +# Save |
| 142 | +ggsave(plot, "plot.png", scale=3) |
| 143 | +ggsave(plot, "plot.html") |
| 144 | + |
| 145 | +# Move files from lets-plot-images to current directory |
| 146 | +if os.path.exists("lets-plot-images/plot.png"): |
| 147 | + shutil.move("lets-plot-images/plot.png", "plot.png") |
| 148 | +if os.path.exists("lets-plot-images/plot.html"): |
| 149 | + shutil.move("lets-plot-images/plot.html", "plot.html") |
| 150 | +if os.path.exists("lets-plot-images") and not os.listdir("lets-plot-images"): |
| 151 | + os.rmdir("lets-plot-images") |
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