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| 1 | +// anyplot.ai |
| 2 | +// swarm-basic: Basic Swarm Plot |
| 3 | +// Library: highcharts 12.6.0 | JavaScript 22.23.1 |
| 4 | +// Quality: 91/100 | Created: 2026-07-26 |
| 5 | + |
| 6 | +const t = window.ANYPLOT_TOKENS; |
| 7 | + |
| 8 | +// --- Deterministic PRNG (mulberry32) + Box-Muller normal ------------------- |
| 9 | +function mulberry32(seed) { |
| 10 | + return function () { |
| 11 | + seed |= 0; |
| 12 | + seed = (seed + 0x6d2b79f5) | 0; |
| 13 | + let x = Math.imul(seed ^ (seed >>> 15), 1 | seed); |
| 14 | + x = (x + Math.imul(x ^ (x >>> 7), 61 | x)) ^ x; |
| 15 | + return ((x ^ (x >>> 14)) >>> 0) / 4294967296; |
| 16 | + }; |
| 17 | +} |
| 18 | + |
| 19 | +const rand = mulberry32(42); |
| 20 | +function randNormal(mean, sd) { |
| 21 | + const u1 = Math.max(rand(), 1e-9); |
| 22 | + const u2 = rand(); |
| 23 | + const z = Math.sqrt(-2 * Math.log(u1)) * Math.cos(2 * Math.PI * u2); |
| 24 | + return mean + z * sd; |
| 25 | +} |
| 26 | + |
| 27 | +// --- Data: CRP biomarker levels (mg/L) across treatment groups ------------- |
| 28 | +const groups = [ |
| 29 | + { name: "Placebo", mean: 8.2, sd: 2.4, n: 42 }, |
| 30 | + { name: "Low Dose", mean: 6.5, sd: 2.1, n: 40 }, |
| 31 | + { name: "Med Dose", mean: 4.8, sd: 1.9, n: 40 }, |
| 32 | + { name: "High Dose", mean: 3.1, sd: 1.6, n: 38 }, |
| 33 | +]; |
| 34 | +const categories = groups.map((g) => g.name); |
| 35 | + |
| 36 | +groups.forEach((g) => { |
| 37 | + g.values = Array.from({ length: g.n }, () => Math.max(0.2, randNormal(g.mean, g.sd))); |
| 38 | + g.sampleMean = g.values.reduce((a, b) => a + b, 0) / g.values.length; |
| 39 | +}); |
| 40 | + |
| 41 | +// --- Beeswarm layout: bin points by value, fan them out from center-out ---- |
| 42 | +// Also reports the densest bin size so denser groups can render more |
| 43 | +// transparent, easing within-bin overlap where points stack up the most. |
| 44 | +function beeswarmOffsets(values, binWidth, gap) { |
| 45 | + const order = values.map((v, i) => i).sort((a, b) => values[a] - values[b]); |
| 46 | + const offsets = new Array(values.length).fill(0); |
| 47 | + let bin = []; |
| 48 | + let binStart = null; |
| 49 | + let maxBinSize = 0; |
| 50 | + |
| 51 | + const flushBin = () => { |
| 52 | + maxBinSize = Math.max(maxBinSize, bin.length); |
| 53 | + bin.forEach((idx, k) => { |
| 54 | + const side = k % 2 === 0 ? 1 : -1; |
| 55 | + const rank = Math.ceil((k + 1) / 2); |
| 56 | + offsets[idx] = side * rank * gap; |
| 57 | + }); |
| 58 | + bin = []; |
| 59 | + }; |
| 60 | + |
| 61 | + order.forEach((i) => { |
| 62 | + const v = values[i]; |
| 63 | + if (binStart === null || v - binStart > binWidth) { |
| 64 | + flushBin(); |
| 65 | + binStart = v; |
| 66 | + } |
| 67 | + bin.push(i); |
| 68 | + }); |
| 69 | + flushBin(); |
| 70 | + |
| 71 | + return { offsets, maxBinSize }; |
| 72 | +} |
| 73 | + |
| 74 | +const BIN_WIDTH = 0.5; // mg/L — points within this range share a swarm bin |
| 75 | +const SWARM_GAP = 0.045; // category-axis units between adjacent swarm points |
| 76 | + |
| 77 | +groups.forEach((g, i) => { |
| 78 | + const { offsets, maxBinSize } = beeswarmOffsets(g.values, BIN_WIDTH, SWARM_GAP); |
| 79 | + g.points = g.values.map((v, k) => ({ x: i + offsets[k], y: Number(v.toFixed(2)) })); |
| 80 | + g.maxBinSize = maxBinSize; |
| 81 | +}); |
| 82 | + |
| 83 | +// Denser groups (bigger densest-bin stacks) render more transparent so |
| 84 | +// overlapping points stay individually readable; sparser groups stay opaque. |
| 85 | +const densestBin = Math.max(...groups.map((g) => g.maxBinSize)); |
| 86 | +const sparsestBin = Math.min(...groups.map((g) => g.maxBinSize)); |
| 87 | +const binRange = densestBin - sparsestBin || 1; |
| 88 | +groups.forEach((g) => { |
| 89 | + const density = (g.maxBinSize - sparsestBin) / binRange; |
| 90 | + g.opacity = 0.88 - density * 0.28; // 0.88 (sparsest) down to 0.60 (densest) |
| 91 | +}); |
| 92 | + |
| 93 | +// --- Chart ------------------------------------------------------------------- |
| 94 | +Highcharts.chart("container", { |
| 95 | + chart: { |
| 96 | + type: "scatter", |
| 97 | + backgroundColor: "transparent", |
| 98 | + animation: false, |
| 99 | + style: { fontFamily: "inherit" }, |
| 100 | + }, |
| 101 | + credits: { enabled: false }, |
| 102 | + colors: t.palette, |
| 103 | + title: { |
| 104 | + text: "swarm-basic · javascript · highcharts · anyplot.ai", |
| 105 | + style: { color: t.ink, fontSize: "22px", fontWeight: "600" }, |
| 106 | + }, |
| 107 | + xAxis: { |
| 108 | + categories, |
| 109 | + min: -0.6, |
| 110 | + max: categories.length - 1 + 0.6, |
| 111 | + tickPositions: categories.map((_, i) => i), |
| 112 | + lineWidth: 0, |
| 113 | + tickColor: t.inkSoft, |
| 114 | + gridLineWidth: 0, |
| 115 | + labels: { style: { color: t.inkSoft, fontSize: "14px" } }, |
| 116 | + title: { text: "Treatment Group", style: { color: t.inkSoft, fontSize: "16px" } }, |
| 117 | + }, |
| 118 | + yAxis: { |
| 119 | + title: { text: "CRP Level (mg/L)", style: { color: t.inkSoft, fontSize: "16px" } }, |
| 120 | + lineWidth: 0, |
| 121 | + gridLineColor: t.grid, |
| 122 | + labels: { style: { color: t.inkSoft, fontSize: "14px" } }, |
| 123 | + }, |
| 124 | + legend: { |
| 125 | + itemStyle: { color: t.inkSoft, fontSize: "14px" }, |
| 126 | + itemHoverStyle: { color: t.ink }, |
| 127 | + }, |
| 128 | + plotOptions: { |
| 129 | + series: { animation: false }, |
| 130 | + scatter: { marker: { radius: 5, lineWidth: 0 } }, |
| 131 | + }, |
| 132 | + series: [ |
| 133 | + ...groups.map((g, i) => ({ |
| 134 | + name: g.name, |
| 135 | + type: "scatter", |
| 136 | + color: t.palette[i], |
| 137 | + data: g.points, |
| 138 | + opacity: g.opacity, |
| 139 | + showInLegend: false, |
| 140 | + })), |
| 141 | + { |
| 142 | + name: "Group mean", |
| 143 | + type: "scatter", |
| 144 | + color: t.ink, |
| 145 | + zIndex: 5, |
| 146 | + data: groups.map((g, i) => ({ x: i, y: Number(g.sampleMean.toFixed(2)) })), |
| 147 | + marker: { symbol: "diamond", radius: 9, lineColor: t.pageBg, lineWidth: 3 }, |
| 148 | + dataLabels: { |
| 149 | + enabled: true, |
| 150 | + format: "{point.y:.1f}", |
| 151 | + y: -16, |
| 152 | + style: { |
| 153 | + color: t.ink, |
| 154 | + fontSize: "13px", |
| 155 | + fontWeight: "600", |
| 156 | + textOutline: "2px " + t.pageBg, |
| 157 | + }, |
| 158 | + }, |
| 159 | + showInLegend: true, |
| 160 | + }, |
| 161 | + ], |
| 162 | +}); |
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