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Update collect_structure_info in src/vasp_snake/collect_info.py
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src/vasp_snake/collect_info.py

Lines changed: 12 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -16,11 +16,21 @@ def collect_structure_info(root=".", atol=1e-6, output="structure_info.json"):
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if info["status"] == JobStatus.DONE.value:
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contcar_path = os.path.join(root, folder, "CONTCAR")
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abs_path = os.path.abspath(contcar_path)
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outcar_path = os.path.join(root, folder, "OUTCAR")
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total_magnetization = None
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if os.path.exists(outcar_path): # << Only try if OUTCAR exists
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try:
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with open(outcar_path) as f:
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outcar_text = f.read()
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total_magnetization = parse_total_magnetization(outcar_text)
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except Exception:
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total_magnetization = None
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if not os.path.exists(contcar_path):
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structure_info[folder] = {
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"abs_path": abs_path,
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"volume": np.nan,
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"composition": None,
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"last_total_magnetization": total_magnetization,
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"reason": "CONTCAR missing",
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}
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continue
@@ -32,13 +42,15 @@ def collect_structure_info(root=".", atol=1e-6, output="structure_info.json"):
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"abs_path": abs_path,
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"volume": np.nan,
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"composition": None,
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"last_total_magnetization": total_magnetization,
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"reason": f"Failed to parse CONTCAR: {e}",
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}
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else:
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structure_info[folder] = {
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"abs_path": abs_path,
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"volume": volume,
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"composition": composition,
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"last_total_magnetization": total_magnetization,
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"reason": "Success",
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}
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# Save as JSON

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