Transmute Kernels to add OMP where not already - fix existing functionality

applications/lfric_atm/build/psyclone_transmute_file_list.mk

@@ -16,7 +16,11 @@
 
 export PSYCLONE_PHYSICS_FILES = \
                                 bl_lsp \
+                                bm_kernel_mod \
                                 bm_tau_kernel_mod \
+                                bl_exp_kernel_mod \
+                                bl_imp_kernel_mod \
+                                bl_imp2_kernel_mod \
                                 btq_int \
                                 conv_gr_kernel_mod \
                                 ex_flux_tq \
@@ -30,21 +34,30 @@ export PSYCLONE_PHYSICS_FILES = \
                                 kmkh \
                                 kmkhz_9c_wtrac \
                                 lw_kernel_mod \
+                                lw_rad_tile_kernel_mod \
+                                lsp_prognostic_tnuc_kernel_mod \
                                 mphys_kernel_mod \
+                                mphys_turb_gen_kernel_mod \
                                 pc2_bl_forced_cu \
                                 pc2_bm_initiate \
                                 pc2_initiation_ctl \
                                 pc2_initiation_kernel_mod \
                                 pc2_conv_coupling_kernel_mod \
+                                photol_kernel_mod \
+                                smith_kernel_mod \
+                                spectral_gwd_kernel_mod \
                                 sw_kernel_mod \
+                                sw_rad_tile_kernel_mod \
+                                tracer_mix_kernel_mod \
                                 ukca_aero_ctl \
                                 ukca_abdulrazzak_ghan \
                                 ukca_chemistry_ctl_full_mod \
-                                ukca_main1-ukca_main1 \
-                                sw_rad_tile_kernel_mod \
-                                jules_imp_kernel_mod \
-                                jules_exp_kernel_mod \
-                                jules_extra_kernel_mod
+                                ukca_main1-ukca_main1
+
+# Causing build slow downs CCE  conv_comorph_kernel_mod \
+                                aerosol_ukca_kernel_mod \
+# The Psyclone Issue to fix this is #3418
+
 
 ##### TRANSMUTE_INCLUDE_METHOD specify_include #####
 

applications/lfric_atm/optimisation/meto-ex1a/transmute/global.py

@@ -1,24 +1,23 @@
-##############################################################################
-# Copyright (c) 2025,  Met Office, on behalf of HMSO and Queen's Printer
-# For further details please refer to the file LICENCE.original which you
-# should have received as part of this distribution.
-##############################################################################
+# -----------------------------------------------------------------------------
+# (C) 2026 Crown copyright Met Office. All rights reserved.
+# The file LICENCE, distributed with this code, contains details of the terms
+# under which the code may be used.
+# -----------------------------------------------------------------------------
 '''
 A global script to add OpenMP to loops present in the file provided.
 This script imports a SCRIPT_OPTIONS_DICT which can be used to override
 small aspects of this script per file it is applied to.
 Overrides currently include:
-* Options list for transformations
-* safe pure calls for loops over calls which can be parallelised
+* ignore_dependencies_for
+* node_type_check
 '''
 
 import logging
 from psyclone.transformations import (
     TransformationError)
 from psyclone.psyir.nodes import Loop
 from transmute_psytrans.transmute_functions import (
-    OMP_PARALLEL_LOOP_DO_TRANS_STATIC,
-    set_pure_subroutines,
+    OMP_PARALLEL_LOOP_DO_TRANS_STATIC
 )
 from script_options import (
     SCRIPT_OPTIONS_DICT
@@ -30,34 +29,37 @@ def trans(psyir):
     PSyclone function call, run through psyir object,
     each schedule (or subroutine) and apply paralleldo transformations
     to each loop.
+    :param psyir: the PSyIR of the provided file.
+    :type psyir: :py:class:`psyclone.psyir.nodes.FileContainer`
+    :returns:
     '''
 
-    # options list for transformation.
-    options = {}
+    fortran_file_name = str(psyir.root.name)
 
-    # Designate calls in regions as safe to parallelise over.
-    safe_pure_calls = []
+    node_type_check = True
+    ignore_dependencies_for = []
 
     fortran_file_name = str(psyir.root.name)
     # Check if file is in the script_options_dict
     # Copy out anything that's needed
     # options list and a pure calls override
     if fortran_file_name in SCRIPT_OPTIONS_DICT:
         file_overrides = SCRIPT_OPTIONS_DICT[fortran_file_name]
-        if "options" in file_overrides.keys():
-            options = file_overrides["options"]
-        if "safe_pure_calls" in file_overrides.keys():
-            safe_pure_calls = file_overrides["safe_pure_calls"]
-
-    # Set the pure calls if needed
-    if safe_pure_calls:
-        set_pure_subroutines(psyir, safe_pure_calls)
+        if "ignore_dependencies_for" in file_overrides.keys():
+            ignore_dependencies_for = file_overrides[
+                    "ignore_dependencies_for"]
+        if "node_type_check" in file_overrides.keys():
+            node_type_check = file_overrides[
+                    "node_type_check"]
 
     # Work through each loop in the file and OMP PARALLEL DO
     for loop in psyir.walk(Loop):
         if not loop.ancestor(Loop):
             try:
-                OMP_PARALLEL_LOOP_DO_TRANS_STATIC.apply(loop, options)
+                OMP_PARALLEL_LOOP_DO_TRANS_STATIC.apply(
+                    loop, 
+                    ignore_dependencies_for=ignore_dependencies_for,
+                    node_type_check=node_type_check)
 
             except (TransformationError, IndexError) as err:
                 logging.warning(