XIOS error with CCE20 on Setonix

[Andrew Coughtrie (andrewcoughtrie)]

Has anyone seen this kind of error from XIOS before:

ddeeptimahanti@nid002604:/scratch/pawsey0001/ddeeptimahanti/lfric/lfric_apps/applications/gungho_model/example> gdb ../bin/gungho_model vgcore.443843
...
DW_FORM_loclistx used without .debug_loclists section [in module /software/projects/pawsey0835/ddeeptimahanti/setonix/2025.11/software/linux-sles15-zen3/cce-20.0.0/yaxt-0.11.0-aqswolbiw6wwvm35ixzihdobryemt4o5/lib64/libyaxt.so.1]
DW_FORM_loclistx used without .debug_loclists section [in module /software/projects/pawsey0835/ddeeptimahanti/setonix/2025.11/software/linux-sles15-zen3/cce-20.0.0/netcdf-fortran-4.6.1-4xgseowhaonyg4pkkhl4iriah4526jam/lib64/libnetcdff.so.7]
DW_FORM_loclistx used without .debug_loclists section [in module /opt/cray/pe/lib64/libmpifort_cray.so.12]
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
Core was generated by `'.
Program terminated with signal SIGSEGV, Segmentation fault.
#0  0x000000000346e64d in xios::CNetCdfInterface::inqDimId(int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int&) ()
Missing separate debuginfos, use: zypper install glibc-debuginfo-2.38-150600.14.37.1.x86_64 libatomic1-debuginfo-14.3.0+git11799-150000.1.11.1.x86_64 libbrotlidec1-debuginfo-1.0.7-150200.3.5.1.x86_64 libcurl4-debuginfo-8.14.1-150600.4.28.1.x86_64 libgcc_s1-debuginfo-14.3.0+git11799-150000.1.11.1.x86_64 libgfortran5-debuginfo-14.3.0+git11799-150000.1.11.1.x86_64 libidn2-0-debuginfo-2.2.0-3.6.1.x86_64 libjitterentropy3-debuginfo-3.4.1-150000.1.12.1.x86_64 libldap-2_4-2-debuginfo-2.4.46-150600.23.21.x86_64 libnghttp2-14-debuginfo-1.40.0-150600.23.2.x86_64 libnl3-200-debuginfo-3.9.0-150600.15.4.4.x86_64 libopenssl3-debuginfo-3.1.4-150600.5.39.1.x86_64 libpsl5-debuginfo-0.20.1-150000.3.3.1.x86_64 libsasl2-3-debuginfo-2.1.28-150600.7.6.2.x86_64 libssh4-debuginfo-0.9.8-150600.11.6.1.x86_64 libstdc++6-debuginfo-14.3.0+git11799-150000.1.11.1.x86_64 valgrind-debuginfo-3.24.0-150600.3.3.1.x86_64
(gdb) bt
#0  0x000000000346e64d in xios::CNetCdfInterface::inqDimId(int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int&) ()
#1  0x000000000329560e in xios::CONetCDF4::addVariable(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, int) ()
#2  0x000000000316123d in xios::CNc4DataOutput::writeUnstructuredDomainUgrid(xios::CDomain*) ()
#3  0x00000000031532ab in xios::CNc4DataOutput::writeDomain_(xios::CDomain*) ()
#4  0x000000000339a122 in xios::CDataOutput::writeFieldGrid(xios::CField*) ()
#5  0x0000000002e77614 in xios::CFile::createHeader() ()
#6  0x0000000002e75ae6 in xios::CFile::checkWriteFile() ()
#7  0x0000000002e5090c in xios::CField::writeUpdateData(xios::CArray<double, 1> const&) ()
#8  0x00000000031160a4 in xios::CInputPin::setInput(unsigned long, std::shared_ptr<xios::CDataPacket>) ()
#9  0x000000000329bccc in xios::COutputPin::deliverOuput(std::shared_ptr<xios::CDataPacket>) ()
#10 0x000000000329b780 in xios::COutputPin::onOutputReady(std::shared_ptr<xios::CDataPacket>) ()
#11 0x00000000032f1bae in void xios::CSourceFilter::streamData<1>(xios::CDate, xios::CArray<double, 1> const&, bool) ()
#12 0x0000000002e6ebeb in void xios::CField::setData<1>(xios::CArray<double, 1> const&, int) ()
#13 0x0000000002e5011c in xios::CField::recvUpdateData(std::map<int, xios::CBufferIn*, std::less<int>, std::allocator<std::pair<int const, xios::CBufferIn*> > >&) ()
#14 0x0000000002e4cc36 in xios::CField::recvUpdateData(xios::CEventServer&) ()
#15 0x0000000002e4c7aa in xios::CField::dispatchEvent(xios::CEventServer&) ()
#16 0x0000000002de517f in xios::CContextServer::dispatchEvent(xios::CEventServer&) ()
#17 0x0000000002de32e3 in xios::CContextServer::eventLoop(bool) ()
#18 0x0000000002ddfd08 in xios::CContextClient::waitEvent(std::__cxx11::list<int, std::allocator<int> >&) ()
#19 0x0000000002ddec78 in xios::CContextClient::sendEvent(xios::CEventClient&) ()
#20 0x0000000002e4f2a4 in xios::CField::sendUpdateData(xios::CArray<double, 1> const&) ()
#21 0x0000000002e98e7f in xios::CFileWriterFilter::onInputReady(std::vector<std::shared_ptr<xios::CDataPacket>, std::allocator<std::shared_ptr<xios::CDataPacket> > >) ()
#22 0x00000000031160a4 in xios::CInputPin::setInput(unsigned long, std::shared_ptr<xios::CDataPacket>) ()
#23 0x000000000329bccc in xios::COutputPin::deliverOuput(std::shared_ptr<xios::CDataPacket>) ()

on behalf of ddeeptimahanti.

Tagging mo-marqh, Ed Hone (@EdHone) and Harry Shepherd (@harry-shepherd) for their expertise.

[Ed Hone (EdHone)]

Not that I can remember, sorry!

[Harry Shepherd (harry-shepherd)]

I don't recognize that error. I guess the usual question, are there any clues in the xios output/error files at maximum logging by setting the parameters

print_file to true
and
info_level to 100

in the iodef.xml file.

[ddeeptimahanti]

Thanks Andrew Coughtrie (@andrewcoughtrie)

cce/18 works perfectly. I'm seeing this error only with cce/20. It could be an issue with the compiler as well. I'll give it a try with the suggested parameters by Harry Shepherd (@harry-shepherd) .

[Aidan Heerdegen (aidanheerdegen)]

Have you installed rose+cylc on Setonix for this work? If so, is that infrastructure available for others to use?

[ddeeptimahanti]

Hi Aidan Heerdegen (@aidanheerdegen), I'm finalising the Cylc setup on Setonix. It's currently in the pawsey branch here:
https://github.com/ddeeptimahanti/lfric_apps

Please follow these instructions to install Cylc in your software space on Setonix:

cd $MYSOFTWARE
module load python/3.11.6
python3 -m venv cylc_venv
source cylc_venv/bin/activate
python3 -m pip install cylc-flow
python3 -m pip install cylc-uiserver
python3 -m pip install cylc-rose metomi-rose


# Set up Cylc - use $MYSCRATCH for workflow directories, define Setonix Slurm platform,
# define "setonix" site name (could also be "pawsey" or something else)
mkdir -p $HOME/.cylc/flow/8
printf "[install]\n    [[symlink dirs]]\n        [[[localhost]]]\n            run = $MYSCRATCH\n" > $HOME/.cylc/flow/8/global.cylc
printf "[platforms]\n    [[setonix,setonix-slurm]]\n        hosts = localhost\n        job runner = slurm\n        install target = localhost\n" >> $HOME/.cylc/flow/8/global.cylc
printf "site=setonix" >> $HOME/.cylc/rose.conf
printf "[rose-stem]\nautomatic-options=SITE=setonix\n" >> $HOME/.cylc/rose.conf

# Display Cylc configuration
cylc config

# Add Rose/Cylc installation directory to ~/.profile - required for running Cylc jobs
echo "export PATH=$MYSOFTWARE/cylc_venv/bin:\$PATH" >> ~/.profile

This is my cylc command: 
cylc vip -S SITE="'pawsey'" -z group=gungho_model_cce -n my_rose_stem_suite --set 'CYLC_WORKFLOW_SRC_DIR="'"$PWD/rose-stem"'"' ./rose-stem  --verbose

Please use this and let me know if you are having any issues.

[ddeeptimahanti]

I raised this issue with Hacka Fett (@christophermaynard) yesterday.

I pulled the latest commit from lfric_apps (08d21a7) and lfric_core (99d8d2b). I made the following changes in lfric_core to compile with cce/20:

diff --git a/components/lfric-xios/source/lfric_xios_temporal_mod.x90 b/components/lfric-xios/source/lfric_xios_temporal_mod.x90
index cb6d7a96d..eba40edf4 100644
--- a/components/lfric-xios/source/lfric_xios_temporal_mod.x90
+++ b/components/lfric-xios/source/lfric_xios_temporal_mod.x90
@@ -127,6 +127,7 @@ contains
 
     type(xios_date)       :: context_start
     integer(i_def)        :: i, j, n_fields
+    class(field_parent_type), pointer    :: fld
 
     ! Read time data from file
     self%time_data = read_time_data(trim(file_path))
diff --git a/infrastructure/build/fortran/crayftn.mk b/infrastructure/build/fortran/crayftn.mk
index 6e3c73fb7..c4e127d78 100644
--- a/infrastructure/build/fortran/crayftn.mk
+++ b/infrastructure/build/fortran/crayftn.mk
@@ -26,15 +26,15 @@ LDFLAGS_OPENMP = -h omp
 
 FFLAGS_COMPILER           =
 FFLAGS_NO_OPTIMISATION    = -O0
-FFLAGS_SAFE_OPTIMISATION  = -O2 -hflex_mp=strict
+FFLAGS_SAFE_OPTIMISATION  = -O2 -hflex_mp=strict -hipa0
 FFLAGS_RISKY_OPTIMISATION = -O3 -hipa2
 
 #Cray has debug levels tied to optimisation levels
 ifeq ($(shell expr ${CRAYFTN_VERSION} \>= 015000000), 1)
   ifeq "$(PROFILE)" "full-debug"
-    FFLAGS_DEBUG    = -G0
+    FFLAGS_DEBUG    = -g 
   else ifeq "$(PROFILE)" "fast-debug"
-    FFLAGS_DEBUG    = -G2
+    FFLAGS_DEBUG    = 
   else ifeq "$(PROFILE)" "production"
     FFLAGS_DEBUG    =
   endif
@@ -78,4 +78,4 @@ endif
 
 DEPRULE_FLAGS = -moduleobjects
 
-FPPFLAGS    = -P
\ No newline at end of file
+FPPFLAGS    = -P
diff --git a/infrastructure/source/utilities/log_mod.F90 b/infrastructure/source/utilities/log_mod.F90
index bcc8545de..f77b74a57 100644
--- a/infrastructure/source/utilities/log_mod.F90
+++ b/infrastructure/source/utilities/log_mod.F90
@@ -136,7 +136,7 @@ contains
 
     ! Check the number of ranks in the incomming communicator, as this
     ! determines whether logging goes to a file, or the terminal
-    call mpi_comm_size( communicator, total_ranks, ierror=status )
+    call mpi_comm_size( communicator, total_ranks, status )
     if (status /= 0) then
       write( error_unit, &
              "('Cannot determine communicator size. (',i0,')')" ) status
@@ -152,7 +152,7 @@ contains
                "('Cannot duplicate the communicator. (',i0,')')" ) status
         call abort_model()
       end if
-      call mpi_comm_rank( mpi_communicator, this_rank, ierror=status )
+      call mpi_comm_rank( mpi_communicator, this_rank, status )
       if (status /= 0) then
         write( error_unit, "('Cannot determine rank. iostat = ',i0)" ) status
         call abort_model()
@@ -235,7 +235,7 @@ contains
 #ifdef NO_MPI
       ! No barriers required in non-mpi build
 #else
-      call mpi_barrier( mpi_communicator, ierror=ios )
+      call mpi_barrier( mpi_communicator, ios )
       call mpi_comm_free( mpi_communicator, ios )
       if (ios /= 0) then
         write( error_unit, "('Cannot free the duplicate MPI comm. ierr = ', i0)" ) ios

The lfric_xios_temporal_mod.f90 change is to avoid:

MODULE lfric_xios_temporal_mod
       ^                      
ftn-855 ftn: ERROR LFRIC_XIOS_TEMPORAL_MOD, File = lfric_xios_temporal_mod.f90, Line = 1, Column = 8
  The compiler has detected errors in module "LFRIC_XIOS_TEMPORAL_MOD".  No module information file will be created for this module.

  USE xios, ONLY: xios_file, xios_filegroup, xios_fieldgroup, xios_recv_field, xios_date, xios_duration, xios_set_attr, &
      ^                                                                                                                  
ftn-878 ftn: WARNING LFRIC_XIOS_TEMPORAL_MOD, File = lfric_xios_temporal_mod.f90, Line = 15, Column = 7
  A module named "DATE_INTERFACE" has already been directly or indirectly use associated into this scope.

          CALL fld % copy_field_properties(self % fields(j, i))
               ^                                                
ftn-113 ftn: ERROR INITIALISE, File = lfric_xios_temporal_mod.f90, Line = 72, Column = 16
  IMPLICIT NONE is specified in the local scope, therefore an explicit type must be specified for data object "FLD".

With cce/20. -G is not a valid option anymore.

From cray-mpich/9.0.1, Cray's MPI Fortran bindings do not define keywords like ierror=.. MPI procedures are defined as generic Fortran subroutines with positional arguments only. So we just need to pass the variable in positional order. Can't use ierror= with MPI routines in log_mod.F90 file.

gungho_model throws SIGFPE if write_diag is set to true

ddeeptimahanti@nid002604:/scratch/pawsey0001/ddeeptimahanti/github_version/lfric_apps/applications/gungho_model/example> gdb ../bin/gungho_model_
Python Exception <class 'KeyboardInterrupt'>: 
gdb: warning: 
Could not load the Python gdb module from `/usr/share/gdb/python'.
Limited Python support is available from the _gdb module.
Suggest passing --data-directory=/path/to/gdb/data-directory.
GNU gdb (GDB; SUSE Linux Enterprise 15) 16.3
Copyright (C) 2024 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
Type "show copying" and "show warranty" for details.
This GDB was configured as "x86_64-suse-linux".
Type "show configuration" for configuration details.
For bug reporting instructions, please see:
<http://bugs.opensuse.org/>.
Find the GDB manual and other documentation resources online at:
    <http://www.gnu.org/software/gdb/documentation/>.

For help, type "help".
Type "apropos word" to search for commands related to "word"...
../bin/gungho_model_: No such file or directory.
(gdb) Quit
(gdb) quit
ddeeptimahanti@nid002604:/scratch/pawsey0001/ddeeptimahanti/github_version/lfric_apps/applications/gungho_model/example> gdb ../bin/gungho_model_cce20_full 
GNU gdb (GDB; SUSE Linux Enterprise 15) 16.3
Copyright (C) 2024 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
Type "show copying" and "show warranty" for details.
This GDB was configured as "x86_64-suse-linux".
Type "show configuration" for configuration details.
For bug reporting instructions, please see:
<http://bugs.opensuse.org/>.
Find the GDB manual and other documentation resources online at:
    <http://www.gnu.org/software/gdb/documentation/>.

For help, type "help".
Type "apropos word" to search for commands related to "word"...
Reading symbols from ../bin/gungho_model_cce20_full...
(gdb) run configuration.nml 
Starting program: /scratch/pawsey0001/ddeeptimahanti/github_version/lfric_apps/applications/gungho_model/bin/gungho_model_cce20_full configuration.nml
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : CPoolRessource::CPoolRessource  : creating new pool : gungho_model
Missing key for blend_frequency enumeration in boundaries namelist.
Missing key for lbc_method enumeration in boundaries namelist.
Missing key for aerosol enumeration in section_choice namelist.
Missing key for boundary_layer enumeration in section_choice namelist.
Missing key for chemistry enumeration in section_choice namelist.
Missing key for cloud enumeration in section_choice namelist.
Missing key for convection enumeration in section_choice namelist.
Missing key for electric enumeration in section_choice namelist.
Missing key for microphysics enumeration in section_choice namelist.
Missing key for orographic_drag enumeration in section_choice namelist.
Missing key for radiation enumeration in section_choice namelist.
Missing key for spectral_gwd enumeration in section_choice namelist.
Missing key for stochastic_physics enumeration in section_choice namelist.
Missing key for surface enumeration in section_choice namelist.
Missing key for sst_source enumeration in initialization namelist.
Missing key for method enumeration in mixing namelist.
Missing key for smag_l_calc enumeration in mixing namelist.
Missing key for profile enumeration in orography namelist.
Missing key for blayer_placement enumeration in physics namelist.
Missing key for convection_placement enumeration in physics namelist.
Missing key for electric_placement enumeration in physics namelist.
Missing key for evap_condense_placement enumeration in physics namelist.
Missing key for lowest_level enumeration in physics namelist.
Missing key for microphysics_placement enumeration in physics namelist.
Missing key for orographic_drag_placement enumeration in physics namelist.
Missing key for radiation_placement enumeration in physics namelist.
Missing key for smagorinsky_placement enumeration in physics namelist.
Missing key for spectral_gwd_placement enumeration in physics namelist.
Missing key for stochastic_physics_placement enumeration in physics namelist.
Missing key for blend_frequency enumeration in boundaries namelist.
Missing key for lbc_method enumeration in boundaries namelist.
Missing key for aerosol enumeration in section_choice namelist.
Missing key for boundary_layer enumeration in section_choice namelist.
Missing key for chemistry enumeration in section_choice namelist.
Missing key for cloud enumeration in section_choice namelist.
Missing key for convection enumeration in section_choice namelist.
Missing key for electric enumeration in section_choice namelist.
Missing key for microphysics enumeration in section_choice namelist.
Missing key for orographic_drag enumeration in section_choice namelist.
Missing key for radiation enumeration in section_choice namelist.
Missing key for spectral_gwd enumeration in section_choice namelist.
Missing key for stochastic_physics enumeration in section_choice namelist.
Missing key for surface enumeration in section_choice namelist.
Missing key for sst_source enumeration in initialization namelist.
Missing key for method enumeration in mixing namelist.
Missing key for smag_l_calc enumeration in mixing namelist.
Missing key for profile enumeration in orography namelist.
Missing key for blayer_placement enumeration in physics namelist.
Missing key for convection_placement enumeration in physics namelist.
Missing key for electric_placement enumeration in physics namelist.
Missing key for evap_condense_placement enumeration in physics namelist.
Missing key for lowest_level enumeration in physics namelist.
Missing key for microphysics_placement enumeration in physics namelist.
Missing key for orographic_drag_placement enumeration in physics namelist.
Missing key for radiation_placement enumeration in physics namelist.
Missing key for smagorinsky_placement enumeration in physics namelist.
Missing key for spectral_gwd_placement enumeration in physics namelist.
Missing key for stochastic_physics_placement enumeration in physics namelist.
20260709153441.810+0800:INFO : Runtime message logging severity set to log level: INFO
20260709153441.810+0800:INFO : Initialising gungho
20260709153441.810+0800:INFO : Checking gungho configuration...
20260709153441.810+0800:WARN : The maximum horizontal departure distance and thus the advecting wind will be capped
20260709153441.810+0800:INFO : ...Check gungho config done
20260709153441.810+0800:INFO : Application built with 64-bit real numbers
20260709153441.810+0800:INFO : Reading global mesh: "C16"
20260709153441.825+0800:INFO : Reading global mesh: "C8"
20260709153441.835+0800:INFO : Reading global mesh: "C4"
20260709153441.843+0800:INFO : Reading global mesh: "C2"
20260709153441.978+0800:INFO :    ... "C16"(id:1) based on mesh "C16"
20260709153441.981+0800:INFO :    ... "C8"(id:2) based on mesh "C8"
20260709153441.983+0800:INFO :    ... "C4"(id:3) based on mesh "C4"
20260709153441.983+0800:INFO :    ... "C2"(id:4) based on mesh "C2"
20260709153441.983+0800:INFO : Adding intergrid map "C16"-->"C8"
20260709153441.983+0800:INFO : Adding intergrid map "C8"-->"C16"
20260709153441.983+0800:INFO : Adding intergrid map "C8"-->"C4"
20260709153441.983+0800:INFO : Adding intergrid map "C4"-->"C8"
20260709153441.983+0800:INFO : Adding intergrid map "C4"-->"C2"
20260709153441.983+0800:INFO : Adding intergrid map "C2"-->"C4"
20260709153441.986+0800:INFO :    ... "C16_2d"(id:5) based on mesh "C16"
20260709153441.986+0800:INFO :    ... "C8_2d"(id:6) based on mesh "C8"
20260709153441.987+0800:INFO :    ... "C4_2d"(id:7) based on mesh "C4"
20260709153441.987+0800:INFO :    ... "C2_2d"(id:8) based on mesh "C2"
20260709153441.987+0800:INFO : Adding intergrid map "C16_2d"-->"C8_2d"
20260709153441.987+0800:INFO : Adding intergrid map "C8_2d"-->"C16_2d"
20260709153441.987+0800:INFO : Adding intergrid map "C8_2d"-->"C4_2d"
20260709153441.987+0800:INFO : Adding intergrid map "C4_2d"-->"C8_2d"
20260709153441.987+0800:INFO : Adding intergrid map "C4_2d"-->"C2_2d"
20260709153441.987+0800:INFO : Adding intergrid map "C2_2d"-->"C4_2d"
20260709153442.006+0800:INFO :    ... "C16_shifted"(id:9) based on mesh "C16"
20260709153442.006+0800:INFO : FEM specifics: creating function spaces...
20260709153443.046+0800:INFO : FEM specifics created
20260709153443.046+0800:INFO : FEM specifics: creating function space chains...
20260709153443.046+0800:INFO : Initialising MultiGrid 4-level function space chain.
20260709153443.060+0800:INFO : Function space chains created
20260709153443.060+0800:INFO : Initialising I/O context

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'tgt_indices' at line 901 in file 'halo_comms_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'tgt_indices' at line 849 in file 'halo_comms_mod.F90' with bounds 1:0.
20260709153443.273+0800:INFO : XIOS domain ['node'] is already registered.
20260709153443.295+0800:INFO : XIOS domain ['edge'] is already registered.
20260709153443.301+0800:INFO : XIOS domain ['face'] is already registered.
20260709153443.513+0800:INFO : Initialise surface altitude: Create surface altitude.
20260709153443.513+0800:INFO : Initialise surface altitude: No initialisation option set for orography.
[New Thread 0x15554f4c86c0 (LWP 788083)]
..
[New Thread 0x154d673cb6c0 (LWP 788336)]
[New Thread 0x154d5f3ca6c0 (LWP 788337)]
20260709153443.685+0800:INFO : Min/max srf_alt_w3 =   0.00000000E+00  0.00000000E+00
20260709153443.687+0800:INFO : Min/max srf_alt_w0 =   0.00000000E+00  0.00000000E+00
20260709153443.688+0800:INFO : assign_orography_field: Flat surface requested.
20260709153443.688+0800:INFO : assign_orography_field: Flat surface requested.
20260709153443.692+0800:INFO : assign_orography_field: Flat surface requested.
20260709153443.692+0800:INFO : assign_orography_field: Flat surface requested.
20260709153443.692+0800:INFO : assign_orography_field: Flat surface requested.
20260709153443.693+0800:INFO : GungHo: Creating prognostics...
20260709153443.699+0800:INFO : Gungho: Initialising prognostic fields
20260709153443.699+0800:INFO : Initialise u with projection
20260709153455.184+0800:INFO : Gungho: Initialised prognostic fields

Thread 1 "gungho_model_cc" received signal SIGFPE, Arithmetic exception.
0x0000000003bda5fc in xios::CMesh::createHashes(double, double) ()
Missing separate debuginfos, use: zypper install glibc-debuginfo-2.38-150600.14.49.1.x86_64 libstdc++6-debuginfo-15.2.0+git10201-150000.1.9.1.x86_64 libcurl4-debuginfo-8.14.1-150700.7.17.1.x86_64 libatomic1-debuginfo-15.2.0+git10201-150000.1.9.1.x86_64 libgcc_s1-debuginfo-15.2.0+git10201-150000.1.9.1.x86_64 libgfortran5-debuginfo-15.2.0+git10201-150000.1.9.1.x86_64 libnghttp2-14-debuginfo-1.64.0-150700.3.3.1.x86_64 libidn2-0-debuginfo-2.2.0-3.6.1.x86_64 libssh4-debuginfo-0.9.8-150600.11.12.1.x86_64 libpsl5-debuginfo-0.20.1-150000.3.3.1.x86_64 libopenssl3-debuginfo-3.2.3-150700.5.36.1.x86_64 libldap-2_4-2-debuginfo-2.4.46-150600.25.3.1.x86_64 libbrotlidec1-debuginfo-1.0.7-150200.3.5.1.x86_64 libjson-c5-debuginfo-0.16-150600.1.4.x86_64 libunistring2-debuginfo-0.9.10-1.1.x86_64 libjitterentropy3-debuginfo-3.4.1-150000.1.12.1.x86_64 libsasl2-3-debuginfo-2.1.28-150600.7.14.1.x86_64 libbrotlicommon1-debuginfo-1.0.7-150200.3.5.1.x86_64 libnl3-200-debuginfo-3.9.0-150600.15.4.4.x86_64
(gdb) bt
#0  0x0000000003bda5fc in xios::CMesh::createHashes(double, double) ()
#1  0x0000000003bdb1c5 in xios::CMesh::createMeshEpsilon(int const&, xios::CArray<double, 1> const&, xios::CArray<double, 1> const&, xios::CArray<double, 2> const&, xios::CArray<double, 2> const&) ()
#2  0x00000000038a1a18 in xios::CFile::sortEnabledFieldsForUgrid() ()
#3  0x000000000389dea5 in xios::CFile::createHeader() ()
#4  0x000000000389c253 in xios::CFile::checkWriteFile() ()
#5  0x00000000038a8684 in xios::CFileWriterStoreFilter::onInputReady(std::vector<std::shared_ptr<xios::CDataPacket>, std::allocator<std::shared_ptr<xios::CDataPacket> > >) ()
#6  0x0000000003ba16b4 in xios::CInputPin::setInput(unsigned long, std::shared_ptr<xios::CDataPacket>) ()
#7  0x0000000003c69ebc in xios::COutputPin::deliverOuput(std::shared_ptr<xios::CDataPacket>) ()
#8  0x0000000003c6996d in xios::COutputPin::onOutputReady(std::shared_ptr<xios::CDataPacket>) ()
#9  0x0000000003d7b87b in xios::CFilter::onInputReady(std::vector<std::shared_ptr<xios::CDataPacket>, std::allocator<std::shared_ptr<xios::CDataPacket> > >) ()
#10 0x0000000003ba16b4 in xios::CInputPin::setInput(unsigned long, std::shared_ptr<xios::CDataPacket>) ()
#11 0x0000000003c69ebc in xios::COutputPin::deliverOuput(std::shared_ptr<xios::CDataPacket>) ()
#12 0x0000000003c6996d in xios::COutputPin::onOutputReady(std::shared_ptr<xios::CDataPacket>) ()
#13 0x0000000003d7b87b in xios::CFilter::onInputReady(std::vector<std::shared_ptr<xios::CDataPacket>, std::allocator<std::shared_ptr<xios::CDataPacket> > >) ()
#14 0x0000000003ba16b4 in xios::CInputPin::setInput(unsigned long, std::shared_ptr<xios::CDataPacket>) ()
#15 0x0000000003c69ebc in xios::COutputPin::deliverOuput(std::shared_ptr<xios::CDataPacket>) ()
#16 0x0000000003c6996d in xios::COutputPin::onOutputReady(std::shared_ptr<xios::CDataPacket>) ()
#17 0x0000000003d7b87b in xios::CFilter::onInputReady(std::vector<std::shared_ptr<xios::CDataPacket>, std::allocator<std::shared_ptr<xios::CDataPacket> > >) ()
--Type <RET> for more, q to quit, c to continue without paging--
#18 0x0000000003ba16b4 in xios::CInputPin::setInput(unsigned long, std::shared_ptr<xios::CDataPacket>) ()
#19 0x0000000003c69ebc in xios::COutputPin::deliverOuput(std::shared_ptr<xios::CDataPacket>) ()
#20 0x0000000003c6996d in xios::COutputPin::onOutputReady(std::shared_ptr<xios::CDataPacket>) ()
#21 0x0000000003d7b87b in xios::CFilter::onInputReady(std::vector<std::shared_ptr<xios::CDataPacket>, std::allocator<std::shared_ptr<xios::CDataPacket> > >) ()
#22 0x0000000003ba16b4 in xios::CInputPin::setInput(unsigned long, std::shared_ptr<xios::CDataPacket>) ()
#23 0x0000000003c69ebc in xios::COutputPin::deliverOuput(std::shared_ptr<xios::CDataPacket>) ()
#24 0x0000000003c6996d in xios::COutputPin::onOutputReady(std::shared_ptr<xios::CDataPacket>) ()
#25 0x0000000003d7b87b in xios::CFilter::onInputReady(std::vector<std::shared_ptr<xios::CDataPacket>, std::allocator<std::shared_ptr<xios::CDataPacket> > >) ()
#26 0x0000000003ba16b4 in xios::CInputPin::setInput(unsigned long, std::shared_ptr<xios::CDataPacket>) ()
#27 0x0000000003c69ebc in xios::COutputPin::deliverOuput(std::shared_ptr<xios::CDataPacket>) ()
#28 0x0000000003c6996d in xios::COutputPin::onOutputReady(std::shared_ptr<xios::CDataPacket>) ()
#29 0x0000000003d7b87b in xios::CFilter::onInputReady(std::vector<std::shared_ptr<xios::CDataPacket>, std::allocator<std::shared_ptr<xios::CDataPacket> > >) ()
#30 0x0000000003ba16b4 in xios::CInputPin::setInput(unsigned long, std::shared_ptr<xios::CDataPacket>) ()
#31 0x0000000003c69ebc in xios::COutputPin::deliverOuput(std::shared_ptr<xios::CDataPacket>) ()
#32 0x0000000003c6996d in xios::COutputPin::onOutputReady(std::shared_ptr<xios::CDataPacket>) ()
#33 0x0000000003bff8a8 in void xios::CModelToClientSourceFilter::streamData<2>(xios::CDate, xios::CArray<double, 2> const&) ()
#34 0x0000000003d777fd in void xios::CField::setData<2>(xios::CArray<double, 2> const&) ()
#35 0x0000000003ae63d4 in cxios_write_data_k82_hdl ()
#36 0x0000000003ae6789 in cxios_write_data_k82 ()
#37 0x00000000031e8a8b in xios_send_field_r8_2d$idata_ ()
--Type <RET> for more, q to quit, c to continue without paging--
#38 0x00000000008c75f4 in write_field_generic (field_name=..., field_proxy=0x7ffffffb0220) at lfric_xios_write_mod.F90:148
#39 0x00000000006632c6 in write_field (this=0x7ffffffb14e0, field_name=...) at field/field_real64_mod.f90:603
#40 0x0000000002ccbf44 in write_scalar_diagnostic (field_name=..., 
    field=<error reading variable: value of type `field_type' requires 368984 bytes, which is more than max-value-size>, 
    clock=0x75530c0, mesh=0x8fdbb80, w3_project=.FALSE.) at diagnostics/diagnostics_io_mod.f90:24
#41 0x0000000001c5d377 in gungho_diagnostics_driver (modeldb=0x44c9fb0 <$data_init$gungho_model_+48>, mesh=0x8fdbb80, 
    twod_mesh=0x8fb5180, nodal_output_on_w3=.FALSE.) at driver/gungho_diagnostics_driver_mod.F90:78
#42 0x00000000005daca1 in write_initial_output (modeldb=0x44c9fb0 <$data_init$gungho_model_+48>, mesh=0x8fdbb80, twod_mesh=0x8fb5180, 
    io_context_name=..., nodal_output_on_w3=.FALSE.) at driver/initial_output_mod.F90:67
#43 0x00000000005588c8 in initialise (program_name=..., modeldb=...) at driver/gungho_driver_mod.F90:129
#44 0x000000000041cc15 in gungho_model () at gungho_model.f90:16
(gdb) quit
A debugging session is active.

	Inferior 1 [process 787972] will be killed.

Quit anyway? (y or n) y

lfric_atm fails at a different stage with write_diag set to true:

ddeeptimahanti@nid002605:/scratch/pawsey0001/ddeeptimahanti/github_version/lfric_apps/applications/lfric_atm/example> ../bin/lfric_atm configuration.nml 
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : CPoolRessource::CPoolRessource  : creating new pool : lfric_atm
Missing key for blend_frequency enumeration in boundaries namelist.
Missing key for lbc_method enumeration in boundaries namelist.
Missing key for iau_mode enumeration in iau namelist.
Missing key for sst_source enumeration in initialization namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for anthrop_heat_option enumeration in jules_surface namelist.
Missing key for casim_cdnc_opt enumeration in microphysics namelist.
Missing key for update_precfrac_opt enumeration in microphysics namelist.
Missing key for method enumeration in mixing namelist.
Missing key for smag_l_calc enumeration in mixing namelist.
Missing key for profile enumeration in orography namelist.
Missing key for electric_placement enumeration in physics namelist.
Missing key for evap_condense_placement enumeration in physics namelist.
Missing key for orographic_drag_placement enumeration in physics namelist.
Missing key for radiation_placement enumeration in physics namelist.
Missing key for smagorinsky_placement enumeration in physics namelist.
Missing key for spectral_gwd_placement enumeration in physics namelist.
Missing key for stochastic_physics_placement enumeration in physics namelist.
Missing key for internal_flux_method enumeration in specified_surface namelist.
Missing key for surf_temp_forcing enumeration in specified_surface namelist.
Missing key for time_units enumeration in specified_surface namelist.
Missing key for time_units_sst enumeration in specified_surface namelist.
Missing key for blend_frequency enumeration in boundaries namelist.
Missing key for lbc_method enumeration in boundaries namelist.
Ignoring iau_addinf_io namelist: missing profile name.
Ignoring iau_addinf_io namelist: missing profile name.
Ignoring iau_ainc_io namelist: missing profile name.
Ignoring iau_ainc_io namelist: missing profile name.
Ignoring iau_bcorr_io namelist: missing profile name.
Missing key for iau_mode enumeration in iau namelist.
Missing key for sst_source enumeration in initialization namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for anthrop_heat_option enumeration in jules_surface namelist.
Missing key for casim_cdnc_opt enumeration in microphysics namelist.
Missing key for update_precfrac_opt enumeration in microphysics namelist.
Missing key for method enumeration in mixing namelist.
Missing key for smag_l_calc enumeration in mixing namelist.
Missing key for profile enumeration in orography namelist.
Missing key for electric_placement enumeration in physics namelist.
Missing key for evap_condense_placement enumeration in physics namelist.
Missing key for orographic_drag_placement enumeration in physics namelist.
Missing key for radiation_placement enumeration in physics namelist.
Missing key for smagorinsky_placement enumeration in physics namelist.
Missing key for spectral_gwd_placement enumeration in physics namelist.
Missing key for stochastic_physics_placement enumeration in physics namelist.
Missing key for internal_flux_method enumeration in specified_surface namelist.
Missing key for surf_temp_forcing enumeration in specified_surface namelist.
Missing key for time_units enumeration in specified_surface namelist.
Missing key for time_units_sst enumeration in specified_surface namelist.
20260709174656.262+0800:INFO : Runtime message logging severity set to log level: INFO
20260709174656.263+0800:INFO : Initialising gungho
20260709174656.263+0800:INFO : Checking gungho configuration...
20260709174656.263+0800:WARN : Diagnostic output not enabled
20260709174656.263+0800:WARN : The maximum horizontal departure distance and thus the advecting wind will be capped
20260709174656.263+0800:INFO : ...Check gungho config done
20260709174656.263+0800:INFO : Application built with 64-bit real numbers
20260709174656.263+0800:INFO : Reading global mesh: "dynamics"
20260709174656.270+0800:INFO : Using auto decomposition
20260709174656.270+0800:INFO : Number of cells in partition 2 X 2

lib-4961 : WARNING 
  Subscript 5 is out of range for dimension 1 for array
  'partitioned_cells' at line 1151 in file 'partition_mod.F90' with bounds 1:4.

lib-4961 : WARNING 
  Subscript 5 is out of range for dimension 1 for array
  'partitioned_cells' at line 1158 in file 'partition_mod.F90' with bounds 1:4.
20260709174656.272+0800:INFO :    ... "dynamics"(id:1) based on mesh "dynamics"
20260709174656.272+0800:INFO :    ... "dynamics_2d"(id:2) based on mesh "dynamics"
20260709174656.272+0800:INFO :    ... "dynamics_shifted"(id:3) based on mesh "dynamics"
20260709174656.272+0800:INFO : FEM specifics: creating function spaces...
20260709174656.272+0800:WARN : Mesh Null Island not set, so using (lon=0, lat=0) as default
20260709174656.272+0800:WARN : Equatorial latitude for mesh not set, so using 0.0 as default
20260709174656.274+0800:WARN : Mesh Null Island not set, so using (lon=0, lat=0) as default
20260709174656.274+0800:WARN : Equatorial latitude for mesh not set, so using 0.0 as default
20260709174656.274+0800:WARN : Mesh Null Island not set, so using (lon=0, lat=0) as default
20260709174656.274+0800:WARN : Equatorial latitude for mesh not set, so using 0.0 as default
20260709174656.275+0800:INFO : FEM specifics created
20260709174656.276+0800:INFO : jules_control_init
20260709174656.276+0800:INFO : JULES surface scheme is being used.
20260709174656.276+0800:INFO : set_derived_variables_jules_surface_types: Derived variables from jules_surface_types
20260709174656.276+0800:INFO : set_derived_variables_jules_surface_types:    ntype =  9
20260709174656.276+0800:INFO : set_derived_variables_jules_surface_types:    nnpft =  5
20260709174656.276+0800:INFO : set_derived_variables_jules_surface_types: - - - - - - end of derived variables - - - - - -
20260709174656.276+0800:INFO : jules_surface_types: Contents of namelist jules_surface_types
20260709174656.276+0800:INFO : jules_surface_types:    npft =  5
20260709174656.276+0800:INFO : jules_surface_types:    nnvg =  4
20260709174656.276+0800:INFO : jules_surface_types:    brd_leaf =  1
20260709174656.276+0800:INFO : jules_surface_types:    ndl_leaf =  2
20260709174656.276+0800:INFO : jules_surface_types:    c3_grass =  3
20260709174656.277+0800:INFO : jules_surface_types:    c4_grass =  4
20260709174656.277+0800:INFO : jules_surface_types:    shrub =  5
20260709174656.277+0800:INFO : jules_surface_types:    urban =  6
20260709174656.277+0800:INFO : jules_surface_types:    lake =  7
20260709174656.277+0800:INFO : jules_surface_types:    soil =  8
20260709174656.277+0800:INFO : jules_surface_types:    ice =  9
20260709174656.277+0800:INFO : jules_surface_types: - - - - - - end of namelist - - - - - -
20260709174656.277+0800:INFO : set_tile_id_arrays:  Surface types present =      1      2      3      4      5      6      7      8      9
20260709174656.277+0800:INFO : CHECK_JULES_MODEL_ENVIRONMENT: Land surface model selected is JULES
20260709174656.277+0800:INFO : jules_physics_init
20260709174656.277+0800:INFO : jules_hydrology: Contents of namelist jules_hydrology
20260709174656.277+0800:INFO : jules_hydrology:    l_top =  T
20260709174656.277+0800:INFO : jules_hydrology:    l_pdm =  F
20260709174656.277+0800:INFO : jules_hydrology:    l_spdmvar =  F
20260709174656.277+0800:INFO : jules_hydrology:    l_baseflow_corr =  T
20260709174656.277+0800:INFO : jules_hydrology:    l_var_rainfrac =  T
20260709174656.277+0800:INFO : jules_hydrology:    l_wetland_unfrozen =  F
20260709174656.277+0800:INFO : jules_hydrology:    l_limit_gsoil =  F
20260709174656.278+0800:INFO : jules_hydrology:    l_inland =  F
20260709174656.278+0800:INFO : jules_hydrology:    dz_pdm =  -1073741824.
20260709174656.278+0800:INFO : jules_hydrology:    b_pdm =  -1073741824.
20260709174656.278+0800:INFO : jules_hydrology:    s_pdm =  -1073741824.
20260709174656.278+0800:INFO : jules_hydrology:    slope_pdm_max =  -1073741824.
20260709174656.278+0800:INFO : jules_hydrology:    ti_max =  10.
20260709174656.278+0800:INFO : jules_hydrology:    ti_wetl =  1.5
20260709174656.278+0800:INFO : jules_hydrology:    zw_max =  6.
20260709174656.278+0800:INFO : jules_hydrology:    nfita =  30
20260709174656.278+0800:INFO : jules_hydrology: - - - - - - end of namelist - - - - - -
20260709174656.278+0800:INFO : jules_radiation: Contents of namelist jules_radiation
20260709174656.278+0800:INFO : jules_radiation:    l_spec_albedo =  T
20260709174656.278+0800:INFO : jules_radiation:    l_spec_alb_bs =  F
20260709174656.278+0800:INFO : jules_radiation:    l_niso_direct =  T
20260709174656.278+0800:INFO : jules_radiation:    l_snow_albedo =  F
20260709174656.278+0800:INFO : jules_radiation:    l_embedded_snow =  T
20260709174656.278+0800:INFO : jules_radiation:    l_mask_snow_orog =  T
20260709174656.278+0800:INFO : jules_radiation:    l_albedo_obs =  F
20260709174656.278+0800:INFO : jules_radiation:    l_dolr_land_black =  F
20260709174656.279+0800:INFO : jules_radiation:    l_spec_sea_alb =  T
20260709174656.279+0800:INFO : jules_radiation:    l_sea_alb_var_chl =  T
20260709174656.279+0800:INFO : jules_radiation:    i_sea_alb_method =  3
20260709174656.279+0800:INFO : jules_radiation:    fixed_sea_albedo =  -1073741824.
20260709174656.279+0800:INFO : jules_radiation:    wght_alb =  0.,  0.5,  0.,  0.5
20260709174656.279+0800:INFO : jules_radiation:    l_partition_albsoil =  T
20260709174656.279+0800:INFO : jules_radiation:    ratio_albsoil =  2.
20260709174656.279+0800:INFO : jules_radiation:    swdn_frac_albsoil =  0.5
20260709174656.279+0800:INFO : jules_radiation:    l_hapke_soil =  T
20260709174656.279+0800:INFO : jules_radiation: - - - - - - end of namelist - - - - - -
20260709174656.279+0800:INFO : jules_sea_seaice: Contents of namelist jules_sea_seaice
20260709174656.279+0800:INFO : jules_sea_seaice:    nice =  1
20260709174656.279+0800:INFO : jules_sea_seaice:    nice_use =  1
20260709174656.279+0800:INFO : jules_sea_seaice:    l_tstar_sice_new =  T
20260709174656.279+0800:INFO : jules_sea_seaice:    l_ssice_albedo =  F
20260709174656.279+0800:INFO : jules_sea_seaice:    l_sice_scattering =  F
20260709174656.279+0800:INFO : jules_sea_seaice:    l_sice_swpen=  F
20260709174656.279+0800:INFO : jules_sea_seaice:    l_sice_meltponds =  F
20260709174656.280+0800:INFO : jules_sea_seaice:    l_sice_meltponds_cice =  F
20260709174656.280+0800:INFO : jules_sea_seaice:    l_sice_multilayers =  F
20260709174656.280+0800:INFO : jules_sea_seaice:    l_cice_alb =  F
20260709174656.280+0800:INFO : jules_sea_seaice:    l_saldep_freeze =  F
20260709174656.280+0800:INFO : jules_sea_seaice:    l_icerough_prognostic =  F
20260709174656.280+0800:INFO : jules_sea_seaice:    l_sice_heatflux =  T
20260709174656.280+0800:INFO : jules_sea_seaice:    l_ctile =  T
20260709174656.280+0800:INFO : jules_sea_seaice:    l_use_dtstar_sea =  F
20260709174656.280+0800:INFO : jules_sea_seaice:    iseasurfalg =  3
20260709174656.280+0800:INFO : jules_sea_seaice:    i_high_wind_drag =  2
20260709174656.280+0800:INFO : jules_sea_seaice:    l_10m_neut =  T
20260709174656.280+0800:INFO : jules_sea_seaice:    a_chrn_coare =  1.60000000000000008E-3
20260709174656.280+0800:INFO : jules_sea_seaice:    b_chrn_coare =  -3.50000000000000007E-3
20260709174656.280+0800:INFO : jules_sea_seaice:    u10_min_coare =  0.
20260709174656.280+0800:INFO : jules_sea_seaice:    u10_max_coare =  22.
20260709174656.280+0800:INFO : jules_sea_seaice:   cdn_max_sea =  0.300E-02
20260709174656.281+0800:INFO : jules_sea_seaice:   cdn_hw_sea =  0.200E-02
20260709174656.281+0800:INFO : jules_sea_seaice:   u_cdn_max =  0.330E+02
20260709174656.281+0800:INFO : jules_sea_seaice:   u_cdn_hw =  0.550E+02
20260709174656.281+0800:INFO : jules_sea_seaice:    buddy_sea =  0
20260709174656.281+0800:INFO : jules_sea_seaice:    z0miz =  0.10000000000000001
20260709174656.281+0800:INFO : jules_sea_seaice:    z0sice =  5.0000000000000001E-4
20260709174656.281+0800:INFO : jules_sea_seaice:    z0h_z0m_miz =  0.20000000000000001
20260709174656.281+0800:INFO : jules_sea_seaice:    z0h_z0m_sice =  0.20000000000000001
20260709174656.281+0800:INFO : jules_sea_seaice:    z0hsea =  4.00000000000000033E-5
20260709174656.281+0800:INFO : jules_sea_seaice:    emis_sea =  0.98499999999999999
20260709174656.281+0800:INFO : jules_sea_seaice:    emis_sice =  0.97599999999999998
20260709174656.281+0800:INFO : jules_surface:    kappai =  2.0899999999999999
20260709174656.281+0800:INFO : jules_surface:    kappai_snow =  0.25600000000000001
20260709174656.281+0800:INFO : jules_sea_seaice:    kappa_seasurf =  0.5
20260709174656.281+0800:INFO : jules_sea_seaice:    SeaSalinityFactor =  0.97999999999999998
20260709174656.281+0800:INFO : jules_sea_seaice:    charnock =  1.09999999999999994E-2
20260709174656.282+0800:INFO : jules_sea_seaice:   alpham =  0.71999999999999997
20260709174656.282+0800:INFO : jules_sea_seaice:   ssalpham =  0.71999999999999997
20260709174656.282+0800:INFO : jules_sea_seaice:   alphac =  0.80000000000000004
20260709174656.282+0800:INFO : jules_sea_seaice:   ssalphac =  0.80000000000000004
20260709174656.282+0800:INFO : jules_sea_seaice:   alphab =  0.60999999999999999
20260709174656.282+0800:INFO : jules_sea_seaice:   dtice =  2.
20260709174656.282+0800:INFO : jules_sea_seaice:   ssdtice =  2.
20260709174656.282+0800:INFO : jules_sea_seaice:   dt_bare =  1.
20260709174656.282+0800:INFO : jules_sea_seaice:   dalb_bare_wet =  -7.49999999999999972E-2
20260709174656.282+0800:INFO : jules_sea_seaice:   pen_rad_frac =  0.20000000000000001
20260709174656.282+0800:INFO : jules_sea_seaice:   sw_beta =  0.59999999999999998
20260709174656.282+0800:INFO : jules_sea_seaice:   albicev_cice  =  0.78000000000000003
20260709174656.282+0800:INFO : jules_sea_seaice:   albicei_cice  =  0.35999999999999999
20260709174656.282+0800:INFO : jules_sea_seaice:   albsnowv_cice  =  0.97999999999999998
20260709174656.282+0800:INFO : jules_sea_seaice:   albsnowi_cice  =  0.69999999999999996
20260709174656.282+0800:INFO : jules_sea_seaice:   albpondv_cice  =  0.27000000000000002
20260709174656.282+0800:INFO : jules_sea_seaice:   albpondi_cice  =  7.00000000000000067E-2
20260709174656.282+0800:INFO : jules_sea_seaice:   ahmax =  0.29999999999999999
20260709174656.283+0800:INFO : jules_sea_seaice:   dalb_mlt_cice =  -7.49999999999999972E-2
20260709174656.283+0800:INFO : jules_sea_seaice:   dalb_mlts_v_cice =  -0.10000000000000001
20260709174656.283+0800:INFO : jules_sea_seaice:   dalb_mlts_i_cice =  -0.14999999999999999
20260709174656.283+0800:INFO : jules_sea_seaice:   dt_bare_cice =  1.
20260709174656.283+0800:INFO : jules_sea_seaice:   dt_snow_cice =  1.
20260709174656.283+0800:INFO : jules_sea_seaice:   pen_rad_frac_cice =  0.40000000000000002
20260709174656.283+0800:INFO : jules_sea_seaice:   sw_beta_cice =  0.59999999999999998
20260709174656.283+0800:INFO : jules_sea_seaice:   snowpatch =  2.00000000000000004E-2
20260709174656.283+0800:INFO : jules_sea_seaice:  l_iceformdrag_lupkes = T
20260709174656.283+0800:INFO : jules_sea_seaice:  l_stability_lupkes = T
20260709174656.283+0800:INFO : jules_sea_seaice:  h_freeboard_min =  0.2860
20260709174656.283+0800:INFO : jules_sea_seaice:  h_freeboard_max =  0.5340
20260709174656.283+0800:INFO : jules_sea_seaice:  beta_floe =   1.000
20260709174656.283+0800:INFO : jules_sea_seaice:  d_floe_min =   8.000
20260709174656.283+0800:INFO : jules_sea_seaice:  d_floe_max =   300.0
20260709174656.283+0800:INFO : jules_sea_seaice:  ss_floe =  0.5000
20260709174656.283+0800:INFO : jules_sea_seaice:  ce_floe =  0.2220
20260709174656.283+0800:INFO : jules_sea_seaice:  hcap_sea =   0.000
20260709174656.284+0800:INFO : jules_sea_seaice:  beta_evap =   1.000
20260709174656.284+0800:INFO : jules_sea_seaice: - - - - - - end of namelist - - - - - -
20260709174656.284+0800:INFO : jules_soil: Contents of namelist jules_soil
20260709174656.284+0800:INFO : jules_soil:    l_vg_soil =  F
20260709174656.284+0800:INFO : jules_soil:    l_dpsids_dsdz =  T
20260709174656.284+0800:INFO : jules_soil:    l_soil_sat_down =  T
20260709174656.284+0800:INFO : jules_soil:    l_holdwater =  F
20260709174656.284+0800:INFO : jules_soil:    l_bedrock =  F
20260709174656.284+0800:INFO : jules_soil:    l_tile_soil =  F
20260709174656.284+0800:INFO : jules_soil:    soilhc_method =  2
20260709174656.284+0800:INFO : jules_soil:    cs_min =  9.99999999999999955E-7
20260709174656.284+0800:INFO : jules_soil:    zsmc =  1.
20260709174656.284+0800:INFO : jules_soil:    zst =  1.
20260709174656.284+0800:INFO : jules_soil:    confrac =  0.29999999999999999
20260709174656.284+0800:INFO : jules_soil:    ns_deep =  -32768
20260709174656.284+0800:INFO : jules_soil:    hcapdeep =  -1073741824.
20260709174656.284+0800:INFO : jules_soil:    hcondeep =  -1073741824.
20260709174656.285+0800:INFO : jules_soil:    dzdeep =  -1073741824.
20260709174656.285+0800:INFO : jules_soil:    dzsoil_io =  0.10000000000000001,  0.25,  0.65000000000000002,  2.
20260709174656.285+0800:INFO : jules_soil:    dzsoil_elev =  -1.
20260709174656.285+0800:INFO : jules_soil: - - - - - - end of namelist - - - - - -
20260709174656.285+0800:INFO : jules_surface: Contents of namelist jules_surface
20260709174656.285+0800:INFO : jules_surface:    l_flake_model =  F
20260709174656.285+0800:INFO : jules_surface:    l_epot_corr =  T
20260709174656.285+0800:INFO : jules_surface:    l_point_data =  F
20260709174656.285+0800:INFO : jules_surface:    l_aggregate =  F
20260709174656.285+0800:INFO : jules_surface:    l_elev_land_ice=  F
20260709174656.285+0800:INFO : jules_surface:    l_land_ice_imp =  T
20260709174656.285+0800:INFO : jules_surface:    l_elev_lw_down=  F
20260709174656.285+0800:INFO : jules_surface:    l_anthrop_heat_src =  F
20260709174656.285+0800:INFO : jules_surface:    anthrop_heat_option =  -32768
20260709174656.286+0800:INFO : jules_surface:    anthrop_heat_mean =  -1073741824.
20260709174656.286+0800:INFO : jules_surface:    l_vary_z0m_soil =  T
20260709174656.286+0800:INFO : jules_surface:    l_urban2t =  F
20260709174656.286+0800:INFO : jules_surface:    l_mo_buoyancy_calc =  T
20260709174656.286+0800:INFO : jules_surface:    i_modiscopt =  1
20260709174656.286+0800:INFO : jules_surface:    all_tiles =  0
20260709174656.286+0800:INFO : jules_surface:    cor_mo_iter =  4
20260709174656.286+0800:INFO : jules_surface:    iscrntdiag =  2
20260709174656.286+0800:INFO : jules_surface:    i_aggregate_opt =  -32768
20260709174656.286+0800:INFO : jules_surface:    formdrag =  2
20260709174656.286+0800:INFO : jules_surface:    fd_stability_dep =  0
20260709174656.286+0800:INFO : jules_surface:    fd_hill_option =  2
20260709174656.286+0800:INFO : jules_surface:    srf_ex_cnv_gust =  1
20260709174656.286+0800:INFO : jules_surface:    orog_drag_param =  0.14999999999999999
20260709174656.286+0800:INFO : jules_surface:    beta_cnv_bl =  4.00000000000000008E-2
20260709174656.286+0800:INFO : jules_surface:    hleaf =  57000.
20260709174656.286+0800:INFO : jules_surface:    hwood =  11000.
20260709174656.286+0800:INFO : jules_surface:    beta1 =  0.82999999999999996
20260709174656.287+0800:INFO : jules_surface:    beta2 =  0.93000000000000005
20260709174656.287+0800:INFO : jules_surface:    fwe_c3 =  0.5
20260709174656.287+0800:INFO : jules_surface:    fwe_c4 =  20000.
20260709174656.287+0800:INFO : jules_surface: - - - - - - end of namelist - - - - - -
20260709174656.287+0800:INFO : jules_vegetation_mod: Contents of namelist jules_vegetation
20260709174656.287+0800:INFO : jules_vegetation_mod:   l_nrun_mid_trif =  F
20260709174656.287+0800:INFO : jules_vegetation_mod:   l_trif_init_accum =  F
20260709174656.287+0800:INFO : jules_vegetation_mod:   l_phenol =  F
20260709174656.287+0800:INFO : jules_vegetation_mod:   l_triffid =  F
20260709174656.287+0800:INFO : jules_vegetation_mod:   l_trif_eq =  F
20260709174656.287+0800:INFO : jules_vegetation_mod:   l_veg_compete =  F
20260709174656.287+0800:INFO : jules_vegetation_mod:   l_ht_compete =  F
20260709174656.287+0800:INFO : jules_vegetation_mod:   l_trif_crop =  F
20260709174656.287+0800:INFO : jules_vegetation_mod:   l_trif_biocrop =  F
20260709174656.287+0800:INFO : jules_vegetation_mod:   l_trif_fire =  F
20260709174656.287+0800:INFO : jules_vegetation_mod:   l_trait_phys =  F
20260709174656.287+0800:INFO : jules_vegetation_mod:   l_landuse =  F
20260709174656.287+0800:INFO : jules_vegetation_mod:   l_ag_expand =  F
20260709174656.287+0800:INFO : jules_vegetation_mod:   l_leaf_n_resp_fix =  F
20260709174656.288+0800:INFO : jules_vegetation_mod:   l_stem_resp_fix =  F
20260709174656.288+0800:INFO : jules_vegetation_mod:   l_scale_resp_pm =  F
20260709174656.288+0800:INFO : jules_vegetation_mod:   l_nitrogen =  F
20260709174656.288+0800:INFO : jules_vegetation_mod:   l_vegcan_soilfx =  T
20260709174656.288+0800:INFO : jules_vegetation_mod:   phenol_period =  -32768
20260709174656.288+0800:INFO : jules_vegetation_mod:   triffid_period =  -32768
20260709174656.288+0800:INFO : jules_vegetation_mod:   l_bvoc_emis =  F
20260709174656.288+0800:INFO : jules_vegetation_mod:   l_o3_damage =  F
20260709174656.288+0800:INFO : jules_vegetation_mod:   l_vegdrag_pft =  5*F
20260709174656.288+0800:INFO : jules_vegetation_mod:   l_rsl_scalar =  F
20260709174656.288+0800:INFO : jules_vegetation_mod:   can_model =  4
20260709174656.288+0800:INFO : jules_vegetation_mod:   can_rad_mod =  6
20260709174656.288+0800:INFO : jules_vegetation_mod:   ilayers =  10
20260709174656.288+0800:INFO : jules_vegetation_mod:   frac_min =  -1073741824.
20260709174656.288+0800:INFO : jules_vegetation_mod:   frac_seed =  -1073741824.
20260709174656.288+0800:INFO : jules_vegetation_mod:   pow =  -1073741824.
20260709174656.288+0800:INFO : jules_vegetation_mod:   cd_leaf =  -1073741824.
20260709174656.289+0800:INFO : jules_vegetation_mod:   c1_usuh =  -1073741824.
20260709174656.289+0800:INFO : jules_vegetation_mod:   c2_usuh =  -1073741824.
20260709174656.289+0800:INFO : jules_vegetation_mod:   c3_usuh =  -1073741824.
20260709174656.289+0800:INFO : jules_vegetation_mod:   stanton_leaf =  -1073741824.
20260709174656.289+0800:INFO : jules_vegetation_mod:   photo_model =  1
20260709174656.289+0800:INFO : jules_vegetation_mod:   photo_acclim_model =  -32768
20260709174656.289+0800:INFO : jules_vegetation_mod:   photo_act_model =  -32768
20260709174656.289+0800:INFO : jules_vegetation_mod:   photo_jv_model =  -32768
20260709174656.289+0800:INFO : jules_vegetation_mod:   n_alloc_jmax =  -1073741824.
20260709174656.289+0800:INFO : jules_vegetation_mod:   n_alloc_vcmax =  -1073741824.
20260709174656.289+0800:INFO : jules_vegetation_mod:   dsj_coef =  3*-1073741824.
20260709174656.289+0800:INFO : jules_vegetation_mod:   dsv_coef =  3*-1073741824.
20260709174656.289+0800:INFO : jules_vegetation_mod:   jv25_coef =  3*-1073741824.
20260709174656.289+0800:INFO : jules_vegetation_mod:   act_j_coef =  3*-1073741824.
20260709174656.289+0800:INFO : jules_vegetation_mod:   act_v_coef =  3*-1073741824.
20260709174656.289+0800:INFO : jules_vegetation_mod:   n_day_photo_acclim =  -1073741824.
20260709174656.290+0800:INFO : jules_vegetation_mod:   stomata_model =  1
20260709174656.290+0800:INFO : jules_vegetation_mod:   l_sugar =  F
20260709174656.290+0800:INFO : jules_vegetation_mod:   l_red =  F
20260709174656.290+0800:INFO : jules_vegetation_mod: - - - - - - end of namelist - - - - - -
20260709174656.290+0800:INFO : jules_urban: Contents of namelist jules_urban
20260709174656.290+0800:INFO : jules_urban:   anthrop_heat_scale =  -1073741824.
20260709174656.290+0800:INFO : jules_urban:   l_moruses_albedo =  F
20260709174656.290+0800:INFO : jules_urban:   l_moruses_emissivity =  F
20260709174656.290+0800:INFO : jules_urban:   l_moruses_rough =  F
20260709174656.290+0800:INFO : jules_urban:   l_moruses_storage =  F
20260709174656.290+0800:INFO : jules_urban:   l_moruses_storage_thin =  F
20260709174656.290+0800:INFO : jules_urban:   l_moruses_macdonald =  F
20260709174656.290+0800:INFO : jules_urban: - - - - - - end of namelist - - - - - -
20260709174656.298+0800:INFO : pftparm: Contents of namelist jules_pftparm
20260709174656.298+0800:INFO : pftparm:   a_wl =  2*0.65000000000000002,  2*5.0000000000000001E-3,  0.10000000000000001
20260709174656.298+0800:INFO : pftparm:   a_ws =  2*10.,  2*1.,  10.
20260709174656.298+0800:INFO : pftparm:   act_jmax =  5*50000.
20260709174656.298+0800:INFO : pftparm:   act_vcmax =  5*72000.
20260709174656.298+0800:INFO : pftparm:   aef =  5*-1073741824.
20260709174656.298+0800:INFO : pftparm:   albsnc_max =  2*0.25,  2*0.59999999999999998,  0.40000000000000002
20260709174656.299+0800:INFO : pftparm:   albsnc_min =  2*0.29999999999999999,  3*0.80000000000000004
20260709174656.299+0800:INFO : pftparm:   albsnf_max =  5*-1073741824.
20260709174656.299+0800:INFO : pftparm:   alpha =  3*8.00000000000000017E-2,  4.00000000000000008E-2,  8.00000000000000017E-2
20260709174656.299+0800:INFO : pftparm:   alpha_elec =  5*-1073741824.
20260709174656.299+0800:INFO : pftparm:   alnir =  0.34100000000000003,  0.27200000000000002,  0.36899999999999999,  0.36799999999999999,  0.39500000000000002
20260709174656.299+0800:INFO : pftparm:   alpar =  5.70000000000000021E-2,  4.10000000000000017E-2,  7.09999999999999937E-2,  8.30000000000000043E-2,  7.39999999999999963E-2
20260709174656.299+0800:INFO : pftparm:   avg_ba =  5*-1073741824.
20260709174656.299+0800:INFO : pftparm:   b_wl =  5*1.667
20260709174656.299+0800:INFO : pftparm:   c3 =  3*1,  0,  1
20260709174656.299+0800:INFO : pftparm:   can_struct_a =  5*1.
20260709174656.299+0800:INFO : pftparm:   catch0 =  5*0.5
20260709174656.299+0800:INFO : pftparm:   ccleaf_max =  5*-1073741824.
20260709174656.299+0800:INFO : pftparm:   ccleaf_min =  5*-1073741824.
20260709174656.299+0800:INFO : pftparm:   ccwood_max =  5*-1073741824.
20260709174656.299+0800:INFO : pftparm:   ccwood_min =  5*-1073741824.
20260709174656.299+0800:INFO : pftparm:   ci_st =  5*-1073741824.
20260709174656.299+0800:INFO : pftparm:   dcatch_dlai =  5*5.00000000000000028E-2
20260709174656.300+0800:INFO : pftparm:   deact_vcmax =  5*-1073741824.
20260709174656.300+0800:INFO : pftparm:   deact_vcmax =  5*-1073741824.
20260709174656.300+0800:INFO : pftparm:   dfp_dcuo =  5*-1073741824.
20260709174656.300+0800:INFO : pftparm:   dgl_dm =  5*0.
20260709174656.300+0800:INFO : pftparm:   dgl_dt =  2*9.,  2*0.,  9.
20260709174656.300+0800:INFO : pftparm:   dqcrit =  8.99999999999999967E-2,  5.99999999999999978E-2,  0.10000000000000001,  7.49999999999999972E-2,  0.10000000000000001
20260709174656.300+0800:INFO : pftparm:   ds_jmax =  5*646.
20260709174656.300+0800:INFO : pftparm:   ds_vcmax =  5*649.
20260709174656.300+0800:INFO : pftparm:   dust_veg_scj =  2*0.,  2*1.,  0.5
20260709174656.300+0800:INFO : pftparm:   dz0v_dh =  2*5.00000000000000028E-2,  3*0.10000000000000001
20260709174656.300+0800:INFO : pftparm:   emis_pft =  0.97999999999999998,  0.98999999999999999,  3*0.97999999999999998
20260709174656.300+0800:INFO : pftparm:   eta_sl =  5*1.00000000000000002E-2
20260709174656.300+0800:INFO : pftparm:   f0 =  2*0.875,  0.90000000000000002,  0.80000000000000004,  0.90000000000000002
20260709174656.300+0800:INFO : pftparm:   fd =  3*1.49999999999999994E-2,  2.50000000000000014E-2,  1.49999999999999994E-2
20260709174656.300+0800:INFO : pftparm:   fef_bc =  5*-1073741824.
20260709174656.300+0800:INFO : pftparm:   fef_ch4 =  5*-1073741824.
20260709174656.301+0800:INFO : pftparm:   fef_co =  5*-1073741824.
20260709174656.301+0800:INFO : pftparm:   fef_co2 =  5*-1073741824.
20260709174656.301+0800:INFO : pftparm:   fef_nox =  5*-1073741824.
20260709174656.301+0800:INFO : pftparm:   fef_oc =  5*-1073741824.
20260709174656.301+0800:INFO : pftparm:   fef_so2 =  5*-1073741824.
20260709174656.301+0800:INFO : pftparm:   fef_c2h4 =  5*-1073741824.
20260709174656.301+0800:INFO : pftparm:   fef_c2h6 =  5*-1073741824.
20260709174656.301+0800:INFO : pftparm:   fef_c3h8 =  5*-1073741824.
20260709174656.301+0800:INFO : pftparm:   fef_hcho =  5*-1073741824.
20260709174656.301+0800:INFO : pftparm:   fef_mecho =  5*-1073741824.
20260709174656.301+0800:INFO : pftparm:   fef_nh3 =  5*-1073741824.
20260709174656.301+0800:INFO : pftparm:   fef_dms =  5*-1073741824.
20260709174656.301+0800:INFO : pftparm:   fire_mort =  5*-1073741824.
20260709174656.301+0800:INFO : pftparm:   fl_o3_ct =  5*-1073741824.
20260709174656.301+0800:INFO : pftparm:   fsmc_of =  5*0.
20260709174656.301+0800:INFO : pftparm:   fsmc_p0 =  5*0.59999999999999998
20260709174656.302+0800:INFO : pftparm:   sug_g0 =  5*-1073741824.
20260709174656.302+0800:INFO : pftparm:   g1_stomata =  5*-1073741824.
20260709174656.302+0800:INFO : pftparm:   g_leaf_0 =  5*0.25
20260709174656.302+0800:INFO : pftparm:   glmin =  5*9.99999999999999955E-7
20260709174656.302+0800:INFO : pftparm:   gpp_st =  5*-1073741824.
20260709174656.302+0800:INFO : pftparm:   sug_grec =  5*-1073741824.
20260709174656.302+0800:INFO : pftparm:   gsoil_f =  5*1.
20260709174656.302+0800:INFO : pftparm:   hw_sw =  5*0.5
20260709174656.302+0800:INFO : pftparm:   ief =  5*-1073741824.
20260709174656.302+0800:INFO : pftparm:   infil_f =  2*4.,  3*2.
20260709174656.302+0800:INFO : pftparm:   jv25_ratio =  5*-1073741824.
20260709174656.302+0800:INFO : pftparm:   kext =  2*0.5,  2*1.,  0.5
20260709174656.302+0800:INFO : pftparm:   kn =  5*0.78000000000000003
20260709174656.302+0800:INFO : pftparm:   knl =  5*0.20000000000000001
20260709174656.302+0800:INFO : pftparm:   kpar =  5*0.5
20260709174656.302+0800:INFO : pftparm:   lai_alb_lim =  5*5.0000000000000001E-3
20260709174656.302+0800:INFO : pftparm:   lma =  8.2400000000000001E-2,  0.2263,  4.9799999999999997E-2,  0.13700000000000001,  6.95000000000000062E-2
20260709174656.303+0800:INFO : pftparm:   mef =  5*-1073741824.
20260709174656.303+0800:INFO : pftparm:   neff =  3*8.00000000000000038E-4,  4.00000000000000019E-4,  8.00000000000000038E-4
20260709174656.303+0800:INFO : pftparm:   nl0 =  4.00000000000000008E-2,  2.99999999999999989E-2,  5.99999999999999978E-2,  2*2.99999999999999989E-2
20260709174656.303+0800:INFO : pftparm:   nmass =  2.10000000000000013E-2,  1.14999999999999998E-2,  2.18999999999999993E-2,  1.31000000000000005E-2,  2.18999999999999993E-2
20260709174656.303+0800:INFO : pftparm:   nr_nl =  5*1.
20260709174656.303+0800:INFO : pftparm:   ns_nl =  2*0.10000000000000001,  2*1.,  0.10000000000000001
20260709174656.303+0800:INFO : pftparm:   nsw =  7.1999999999999998E-3,  8.30000000000000009E-3,  1.60399999999999987E-2,  2.01999999999999992E-2,  7.1999999999999998E-3
20260709174656.303+0800:INFO : pftparm:   nr =  1.7260000000000001E-2,  7.83999999999999975E-3,  1.61999999999999991E-2,  8.39999999999999948E-3,  1.7260000000000001E-2
20260709174656.303+0800:INFO : pftparm:   omega =  0.10100000000000001,  8.30000000000000043E-2,  0.13200000000000001,  0.13500000000000001,  0.115
20260709174656.303+0800:INFO : pftparm:   omnir =  0.78800000000000003,  0.54500000000000004,  0.86399999999999999,  0.78700000000000003,  0.78500000000000003
20260709174656.303+0800:INFO : pftparm:   orient =  5*0
20260709174656.303+0800:INFO : pftparm:   q10_leaf =  5*2.
20260709174656.303+0800:INFO : pftparm:   r_grow =  5*0.25
20260709174656.303+0800:INFO : pftparm:   rootd_ft =  3.,  1.,  3*0.5
20260709174656.303+0800:INFO : pftparm:   sigl =  3.74999999999999986E-2,  0.10000000000000001,  2.50000000000000014E-2,  2*5.00000000000000028E-2
20260709174656.303+0800:INFO : pftparm:   tef =  5*-1073741824.
20260709174656.303+0800:INFO : pftparm:   tleaf_of =  273.14999999999998,  243.15000000000001,  2*258.14999999999998,  243.15000000000001
20260709174656.304+0800:INFO : pftparm:   tlow =  0.,  -5.,  0.,  13.,  0.
20260709174656.304+0800:INFO : pftparm:   tupp =  36.,  31.,  36.,  45.,  36.
20260709174656.304+0800:INFO : pftparm:   vint =  5.7300000000000004,  6.3200000000000003,  6.4199999999999999,  0.,  14.710000000000001
20260709174656.304+0800:INFO : pftparm:   vsl =  29.809999999999999,  18.149999999999999,  40.960000000000001,  10.24,  23.149999999999999
20260709174656.304+0800:INFO : pftparm:   sug_yg =  5*-1073741824.
20260709174656.304+0800:INFO : pftparm:   z0v =  2*1.1000000000000001,  2*0.22,  1.
20260709174656.304+0800:INFO : pftparm:   sox_a =  5*-1073741824.
20260709174656.304+0800:INFO : pftparm:   sox_p50 =  5*-1073741824.
20260709174656.304+0800:INFO : pftparm:   sox_rp_min =  5*-1073741824.
20260709174656.304+0800:INFO : pftparm: - - - - - - end of namelist - - - - - -
20260709174656.304+0800:INFO : nvegparm: Contents of namelist jules_nvegparm
20260709174656.304+0800:INFO : nvegparm:   albsnc_nvg =  0.40000000000000002,  3*0.80000000000000004
20260709174656.304+0800:INFO : nvegparm:   albsnf_nvg =  0.17999999999999999,  0.12,  -1.,  0.75
20260709174656.304+0800:INFO : nvegparm:   albsnf_nvgl =
20260709174656.304+0800:INFO : nvegparm:   albsnf_nvgu =
20260709174656.304+0800:INFO : nvegparm:   catch_nvg =  0.5,  3*0.
20260709174656.304+0800:INFO : nvegparm:   ch_nvg =  280000.,  21100000.,  2*0.
20260709174656.304+0800:INFO : nvegparm:   emis_nvg =  0.96999999999999997,  0.98499999999999999,  0.90000000000000002,  0.98999999999999999
20260709174656.305+0800:INFO : nvegparm:   gs_nvg =  2*0.,  1.00000000000000002E-2,  1000000.
20260709174656.305+0800:INFO : nvegparm:   infil_nvg =  0.10000000000000001,  0.,  0.5,  0.
20260709174656.305+0800:INFO : nvegparm:   vf_nvg =  2*1.,  2*0.
20260709174656.305+0800:INFO : nvegparm:   z0_nvg =  1.,  1.00000000000000005E-4,  1.00000000000000002E-3,  5.0000000000000001E-4
20260709174656.305+0800:INFO : nvegparm: - - - - - - end of namelist - - - - - -
20260709174656.305+0800:INFO : C_Z0H_Z0M_PRINT: Contents of c_z0h_z0m
20260709174656.305+0800:INFO : C_Z0H_Z0M_PRINT:   z0h_z0m_classic =  9*-1073741824.
20260709174656.305+0800:INFO : C_Z0H_Z0M_PRINT:   z0h_z0m =  2*1.,  3*1.00000000000000002E-2,  9.99999999999999955E-8,  0.25,  2*0.20000000000000001
20260709174656.305+0800:INFO : C_Z0H_Z0M_PRINT: - - - - - - end of c_z0h_z0m - - - - - -
20260709174656.305+0800:INFO : Initialising I/O context

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'tgt_indices' at line 901 in file 'halo_comms_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
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  'tgt_indices' at line 849 in file 'halo_comms_mod.F90' with bounds 1:0.
20260709174656.308+0800:INFO : XIOS domain ['node'] is already registered.
20260709174656.308+0800:INFO : XIOS domain ['edge'] is already registered.
20260709174656.308+0800:INFO : XIOS domain ['face'] is already registered.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
20260709174656.358+0800:INFO : Initialise surface altitude: Create surface altitude.
20260709174656.358+0800:INFO : Initialise surface altitude: No initialisation option set for orography.
20260709174656.422+0800:INFO : Min/max srf_alt_w3 =   0.00000000E+00  0.00000000E+00
20260709174656.423+0800:INFO : Min/max srf_alt_w0 =   0.00000000E+00  0.00000000E+00
20260709174656.423+0800:INFO : assign_orography_field: Flat surface requested.
20260709174656.423+0800:INFO : assign_orography_field: Flat surface requested.
20260709174656.429+0800:INFO : GungHo: Creating prognostics...
20260709174656.429+0800:INFO : Create physics prognostics
20260709174656.440+0800:INFO : Physics field collections initialised
20260709174656.440+0800:INFO : Gungho: Initialising prognostic fields
20260709174656.457+0800:INFO : Gungho: Initialised prognostic fields
20260709174656.463+0800:INFO : Field Min/max u_in_w3 =      -8.75000000      -4.61000000
20260709174656.463+0800:INFO : Field Min/max v_in_w3 =       0.00000000       0.00000000
20260709174656.463+0800:INFO : Field Min/max w_in_wth =      -0.00647111       0.00000000
20260709174656.463+0800:INFO : Gungho: No ancillaries to be read for this run.
20260709174656.465+0800:INFO : semi_implicit_timestep: initialised timestepping algorithm
20260709174656.465+0800:S1:INFO : Start of timestep 1
20260709174656.547+0800:S1:INFO : User has requested a 120 second microphysics iterative timestep 
Using 10 iterations, such that timestep_mp =         120.00 seconds

lib-4961 : WARNING 
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  'tile_lw_albedo_data' at line 931 in file 'rad_tile_alg_mod_psy.f90' with bounds 1:0.

lib-4961 : WARNING 
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  'ainfo' at line 1042 in file 'jules_exp_kernel_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
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lib-4961 : WARNING 
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lib-4961 : WARNING 
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lib-4961 : WARNING 
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lib-4961 : WARNING 
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lib-4961 : WARNING 
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lib-4961 : WARNING 
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lib-4961 : WARNING 
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lib-4961 : WARNING 
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lib-4961 : WARNING 
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lib-4961 : WARNING 
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lib-4961 : WARNING 
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  'trif_vars' at line 601 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

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  'progs' at line 602 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
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  'ainfo' at line 603 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
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lib-4961 : WARNING 
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lib-4961 : WARNING 
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lib-4961 : WARNING 
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lib-4961 : WARNING 
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  Subscript 1 is out of range for dimension 1 for array
  'chemvars' at line 620 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'chemvars' at line 621 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'chemvars' at line 621 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'trif_vars' at line 623 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'trif_vars' at line 623 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'trif_vars' at line 623 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 2 for array
  'crop_vars' at line 626 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'crop_vars' at line 626 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'crop_vars' at line 626 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'crop_vars' at line 627 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'crop_vars' at line 627 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 2 for array
  'crop_vars' at line 627 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'crop_vars' at line 627 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'crop_vars' at line 629 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'crop_vars' at line 631 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'crop_vars' at line 631 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'crop_vars' at line 632 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'crop_vars' at line 632 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'psparms' at line 634 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'psparms' at line 634 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 639 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'progs' at line 641 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'progs' at line 641 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'progs' at line 641 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'progs' at line 642 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'progs' at line 642 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'progs' at line 642 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'jules_vars' at line 644 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'jules_vars' at line 644 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'jules_vars' at line 646 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'lake_vars' at line 650 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'lake_vars' at line 650 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'lake_vars' at line 650 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'lake_vars' at line 651 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'lake_vars' at line 651 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'lake_vars' at line 651 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'lake_vars' at line 653 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'lake_vars' at line 653 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'ainfo' at line 655 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'ainfo' at line 655 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'chemvars' at line 659 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'chemvars' at line 659 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'ainfo' at line 727 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'jules_vars' at line 727 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'jules_vars' at line 729 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 740 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 740 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'ainfo' at line 741 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'aerotype' at line 754 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'aerotype' at line 754 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'aerotype' at line 754 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'jules_vars' at line 765 in file 'surf_couple_explicit_mod.F90' with bounds 1:0.
20260709174656.777+0800:S1:INFO : Field Min/max dtheta slow =      -0.02905329       0.00000000

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'ainfo' at line 794 in file 'jules_imp_kernel_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'ainfo' at line 795 in file 'jules_imp_kernel_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'ainfo' at line 795 in file 'jules_imp_kernel_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'ainfo' at line 1230 in file 'jules_imp_kernel_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'ainfo' at line 413 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'ainfo' at line 413 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'progs' at line 423 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 427 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 427 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'ainfo' at line 438 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'ainfo' at line 438 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'progs' at line 440 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'progs' at line 440 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'ainfo' at line 441 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'coast' at line 441 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 445 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'progs' at line 445 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 449 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'progs' at line 449 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'progs' at line 451 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 451 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 451 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 454 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 454 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 456 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 458 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 458 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 459 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 460 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 460 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 460 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'lake_vars' at line 464 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'lake_vars' at line 466 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 468 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 470 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 471 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'jules_vars' at line 473 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'progs' at line 475 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'jules_vars' at line 477 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'crop_vars' at line 579 in file 'jules_land_sf_implicit.jls.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'crop_vars' at line 579 in file 'jules_land_sf_implicit.jls.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'crop_vars' at line 580 in file 'jules_land_sf_implicit.jls.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'crop_vars' at line 580 in file 'jules_land_sf_implicit.jls.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'crop_vars' at line 582 in file 'jules_land_sf_implicit.jls.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'crop_vars' at line 584 in file 'jules_land_sf_implicit.jls.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'ainfo' at line 534 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'ainfo' at line 534 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 543 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 543 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'fluxes' at line 547 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'progs' at line 548 in file 'surf_couple_implicit_mod.F90' with bounds 1:0.
20260709174656.897+0800:S1:ERROR:  field snow__grid_snow_masswith grid_ref and domain_ref : __grid_face__                                                                                                                    face
 STOP 1

[ddeeptimahanti]

lfric_atm with write_diag set to true seg faults with the same error noticed in Feb.

ddeeptimahanti@nid002605:/scratch/pawsey0001/ddeeptimahanti/github_version/lfric_apps/applications/lfric_atm/example> gdb ../bin/lfric_atm_cce20_full 
GNU gdb (GDB; SUSE Linux Enterprise 15) 16.3
Copyright (C) 2024 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
Type "show copying" and "show warranty" for details.
This GDB was configured as "x86_64-suse-linux".
Type "show configuration" for configuration details.
For bug reporting instructions, please see:
<http://bugs.opensuse.org/>.
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    <http://www.gnu.org/software/gdb/documentation/>.

For help, type "help".
Type "apropos word" to search for commands related to "word"...
Reading symbols from ../bin/lfric_atm_cce20_full...
ru(gdb) run configuration.nml 
Starting program: /scratch/pawsey0001/ddeeptimahanti/github_version/lfric_apps/applications/lfric_atm/bin/lfric_atm_cce20_full configuration.nml
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : WARNING : zoom_axis is deprecated, replaced by extract_axis.
-> info : CPoolRessource::CPoolRessource  : creating new pool : lfric_atm
Missing key for blend_frequency enumeration in boundaries namelist.
Missing key for lbc_method enumeration in boundaries namelist.
Missing key for iau_mode enumeration in iau namelist.
Missing key for sst_source enumeration in initialization namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for anthrop_heat_option enumeration in jules_surface namelist.
Missing key for casim_cdnc_opt enumeration in microphysics namelist.
Missing key for update_precfrac_opt enumeration in microphysics namelist.
Missing key for method enumeration in mixing namelist.
Missing key for smag_l_calc enumeration in mixing namelist.
Missing key for profile enumeration in orography namelist.
Missing key for electric_placement enumeration in physics namelist.
Missing key for evap_condense_placement enumeration in physics namelist.
Missing key for orographic_drag_placement enumeration in physics namelist.
Missing key for radiation_placement enumeration in physics namelist.
Missing key for smagorinsky_placement enumeration in physics namelist.
Missing key for spectral_gwd_placement enumeration in physics namelist.
Missing key for stochastic_physics_placement enumeration in physics namelist.
Missing key for internal_flux_method enumeration in specified_surface namelist.
Missing key for surf_temp_forcing enumeration in specified_surface namelist.
Missing key for time_units enumeration in specified_surface namelist.
Missing key for time_units_sst enumeration in specified_surface namelist.
Missing key for blend_frequency enumeration in boundaries namelist.
Missing key for lbc_method enumeration in boundaries namelist.
Ignoring iau_addinf_io namelist: missing profile name.
Ignoring iau_addinf_io namelist: missing profile name.
Ignoring iau_ainc_io namelist: missing profile name.
Ignoring iau_ainc_io namelist: missing profile name.
Ignoring iau_bcorr_io namelist: missing profile name.
Missing key for iau_mode enumeration in iau namelist.
Missing key for sst_source enumeration in initialization namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for fsmc_mod_io enumeration in jules_pftparm namelist.
Missing key for anthrop_heat_option enumeration in jules_surface namelist.
Missing key for casim_cdnc_opt enumeration in microphysics namelist.
Missing key for update_precfrac_opt enumeration in microphysics namelist.
Missing key for method enumeration in mixing namelist.
Missing key for smag_l_calc enumeration in mixing namelist.
Missing key for profile enumeration in orography namelist.
Missing key for electric_placement enumeration in physics namelist.
Missing key for evap_condense_placement enumeration in physics namelist.
Missing key for orographic_drag_placement enumeration in physics namelist.
Missing key for radiation_placement enumeration in physics namelist.
Missing key for smagorinsky_placement enumeration in physics namelist.
Missing key for spectral_gwd_placement enumeration in physics namelist.
Missing key for stochastic_physics_placement enumeration in physics namelist.
Missing key for internal_flux_method enumeration in specified_surface namelist.
Missing key for surf_temp_forcing enumeration in specified_surface namelist.
Missing key for time_units enumeration in specified_surface namelist.
Missing key for time_units_sst enumeration in specified_surface namelist.
20260709180316.797+0800:INFO : Runtime message logging severity set to log level: INFO
20260709180316.797+0800:INFO : Initialising gungho
20260709180316.797+0800:INFO : Checking gungho configuration...
20260709180316.797+0800:WARN : The maximum horizontal departure distance and thus the advecting wind will be capped
20260709180316.797+0800:INFO : ...Check gungho config done
20260709180316.797+0800:INFO : Application built with 64-bit real numbers
20260709180316.797+0800:INFO : Reading global mesh: "dynamics"
20260709180316.805+0800:INFO : Using auto decomposition
20260709180316.805+0800:INFO : Number of cells in partition 2 X 2

lib-4961 : WARNING 
  Subscript 5 is out of range for dimension 1 for array
  'partitioned_cells' at line 1151 in file 'partition_mod.F90' with bounds 1:4.

lib-4961 : WARNING 
  Subscript 5 is out of range for dimension 1 for array
  'partitioned_cells' at line 1158 in file 'partition_mod.F90' with bounds 1:4.
20260709180316.806+0800:INFO :    ... "dynamics"(id:1) based on mesh "dynamics"
20260709180316.806+0800:INFO :    ... "dynamics_2d"(id:2) based on mesh "dynamics"
20260709180316.806+0800:INFO :    ... "dynamics_shifted"(id:3) based on mesh "dynamics"
20260709180316.806+0800:INFO : FEM specifics: creating function spaces...
20260709180316.807+0800:WARN : Mesh Null Island not set, so using (lon=0, lat=0) as default
20260709180316.807+0800:WARN : Equatorial latitude for mesh not set, so using 0.0 as default
20260709180316.808+0800:WARN : Mesh Null Island not set, so using (lon=0, lat=0) as default
20260709180316.808+0800:WARN : Equatorial latitude for mesh not set, so using 0.0 as default
20260709180316.808+0800:WARN : Mesh Null Island not set, so using (lon=0, lat=0) as default
20260709180316.808+0800:WARN : Equatorial latitude for mesh not set, so using 0.0 as default
20260709180316.809+0800:INFO : FEM specifics created
20260709180316.810+0800:INFO : jules_control_init
20260709180316.810+0800:INFO : JULES surface scheme is being used.
20260709180316.810+0800:INFO : set_derived_variables_jules_surface_types: Derived variables from jules_surface_types
20260709180316.810+0800:INFO : set_derived_variables_jules_surface_types:    ntype =  9
20260709180316.810+0800:INFO : set_derived_variables_jules_surface_types:    nnpft =  5
20260709180316.810+0800:INFO : set_derived_variables_jules_surface_types: - - - - - - end of derived variables - - - - - -
20260709180316.811+0800:INFO : jules_surface_types: Contents of namelist jules_surface_types
20260709180316.811+0800:INFO : jules_surface_types:    npft =  5
20260709180316.811+0800:INFO : jules_surface_types:    nnvg =  4
20260709180316.811+0800:INFO : jules_surface_types:    brd_leaf =  1
20260709180316.811+0800:INFO : jules_surface_types:    ndl_leaf =  2
20260709180316.811+0800:INFO : jules_surface_types:    c3_grass =  3
20260709180316.811+0800:INFO : jules_surface_types:    c4_grass =  4
20260709180316.811+0800:INFO : jules_surface_types:    shrub =  5
20260709180316.811+0800:INFO : jules_surface_types:    urban =  6
20260709180316.811+0800:INFO : jules_surface_types:    lake =  7
20260709180316.811+0800:INFO : jules_surface_types:    soil =  8
20260709180316.811+0800:INFO : jules_surface_types:    ice =  9
20260709180316.811+0800:INFO : jules_surface_types: - - - - - - end of namelist - - - - - -
20260709180316.811+0800:INFO : set_tile_id_arrays:  Surface types present =      1      2      3      4      5      6      7      8      9
20260709180316.811+0800:INFO : CHECK_JULES_MODEL_ENVIRONMENT: Land surface model selected is JULES
20260709180316.811+0800:INFO : jules_physics_init
20260709180316.811+0800:INFO : jules_hydrology: Contents of namelist jules_hydrology
20260709180316.811+0800:INFO : jules_hydrology:    l_top =  T
20260709180316.811+0800:INFO : jules_hydrology:    l_pdm =  F
20260709180316.811+0800:INFO : jules_hydrology:    l_spdmvar =  F
20260709180316.812+0800:INFO : jules_hydrology:    l_baseflow_corr =  T
20260709180316.812+0800:INFO : jules_hydrology:    l_var_rainfrac =  T
20260709180316.812+0800:INFO : jules_hydrology:    l_wetland_unfrozen =  F
20260709180316.812+0800:INFO : jules_hydrology:    l_limit_gsoil =  F
20260709180316.812+0800:INFO : jules_hydrology:    l_inland =  F
20260709180316.812+0800:INFO : jules_hydrology:    dz_pdm =  -1073741824.
20260709180316.812+0800:INFO : jules_hydrology:    b_pdm =  -1073741824.
20260709180316.812+0800:INFO : jules_hydrology:    s_pdm =  -1073741824.
20260709180316.812+0800:INFO : jules_hydrology:    slope_pdm_max =  -1073741824.
20260709180316.812+0800:INFO : jules_hydrology:    ti_max =  10.
20260709180316.812+0800:INFO : jules_hydrology:    ti_wetl =  1.5
20260709180316.812+0800:INFO : jules_hydrology:    zw_max =  6.
20260709180316.812+0800:INFO : jules_hydrology:    nfita =  30
20260709180316.812+0800:INFO : jules_hydrology: - - - - - - end of namelist - - - - - -
20260709180316.812+0800:INFO : jules_radiation: Contents of namelist jules_radiation
20260709180316.812+0800:INFO : jules_radiation:    l_spec_albedo =  T
20260709180316.812+0800:INFO : jules_radiation:    l_spec_alb_bs =  F
20260709180316.812+0800:INFO : jules_radiation:    l_niso_direct =  T
20260709180316.813+0800:INFO : jules_radiation:    l_snow_albedo =  F
20260709180316.813+0800:INFO : jules_radiation:    l_embedded_snow =  T
20260709180316.813+0800:INFO : jules_radiation:    l_mask_snow_orog =  T
20260709180316.813+0800:INFO : jules_radiation:    l_albedo_obs =  F
20260709180316.813+0800:INFO : jules_radiation:    l_dolr_land_black =  F
20260709180316.813+0800:INFO : jules_radiation:    l_spec_sea_alb =  T
20260709180316.813+0800:INFO : jules_radiation:    l_sea_alb_var_chl =  T
20260709180316.813+0800:INFO : jules_radiation:    i_sea_alb_method =  3
20260709180316.813+0800:INFO : jules_radiation:    fixed_sea_albedo =  -1073741824.
20260709180316.813+0800:INFO : jules_radiation:    wght_alb =  0.,  0.5,  0.,  0.5
20260709180316.813+0800:INFO : jules_radiation:    l_partition_albsoil =  T
20260709180316.813+0800:INFO : jules_radiation:    ratio_albsoil =  2.
20260709180316.813+0800:INFO : jules_radiation:    swdn_frac_albsoil =  0.5
20260709180316.813+0800:INFO : jules_radiation:    l_hapke_soil =  T
20260709180316.813+0800:INFO : jules_radiation: - - - - - - end of namelist - - - - - -
20260709180316.813+0800:INFO : jules_sea_seaice: Contents of namelist jules_sea_seaice
20260709180316.814+0800:INFO : jules_sea_seaice:    nice =  1
20260709180316.814+0800:INFO : jules_sea_seaice:    nice_use =  1
20260709180316.814+0800:INFO : jules_sea_seaice:    l_tstar_sice_new =  T
20260709180316.814+0800:INFO : jules_sea_seaice:    l_ssice_albedo =  F
20260709180316.814+0800:INFO : jules_sea_seaice:    l_sice_scattering =  F
20260709180316.814+0800:INFO : jules_sea_seaice:    l_sice_swpen=  F
20260709180316.814+0800:INFO : jules_sea_seaice:    l_sice_meltponds =  F
20260709180316.814+0800:INFO : jules_sea_seaice:    l_sice_meltponds_cice =  F
20260709180316.814+0800:INFO : jules_sea_seaice:    l_sice_multilayers =  F
20260709180316.814+0800:INFO : jules_sea_seaice:    l_cice_alb =  F
20260709180316.814+0800:INFO : jules_sea_seaice:    l_saldep_freeze =  F
20260709180316.814+0800:INFO : jules_sea_seaice:    l_icerough_prognostic =  F
20260709180316.814+0800:INFO : jules_sea_seaice:    l_sice_heatflux =  T
20260709180316.814+0800:INFO : jules_sea_seaice:    l_ctile =  T
20260709180316.814+0800:INFO : jules_sea_seaice:    l_use_dtstar_sea =  F
20260709180316.814+0800:INFO : jules_sea_seaice:    iseasurfalg =  3
20260709180316.815+0800:INFO : jules_sea_seaice:    i_high_wind_drag =  2
20260709180316.815+0800:INFO : jules_sea_seaice:    l_10m_neut =  T
20260709180316.815+0800:INFO : jules_sea_seaice:    a_chrn_coare =  1.60000000000000008E-3
20260709180316.815+0800:INFO : jules_sea_seaice:    b_chrn_coare =  -3.50000000000000007E-3
20260709180316.815+0800:INFO : jules_sea_seaice:    u10_min_coare =  0.
20260709180316.815+0800:INFO : jules_sea_seaice:    u10_max_coare =  22.
20260709180316.815+0800:INFO : jules_sea_seaice:   cdn_max_sea =  0.300E-02
20260709180316.815+0800:INFO : jules_sea_seaice:   cdn_hw_sea =  0.200E-02
20260709180316.815+0800:INFO : jules_sea_seaice:   u_cdn_max =  0.330E+02
20260709180316.815+0800:INFO : jules_sea_seaice:   u_cdn_hw =  0.550E+02
20260709180316.815+0800:INFO : jules_sea_seaice:    buddy_sea =  0
20260709180316.815+0800:INFO : jules_sea_seaice:    z0miz =  0.10000000000000001
20260709180316.815+0800:INFO : jules_sea_seaice:    z0sice =  5.0000000000000001E-4
20260709180316.815+0800:INFO : jules_sea_seaice:    z0h_z0m_miz =  0.20000000000000001
20260709180316.815+0800:INFO : jules_sea_seaice:    z0h_z0m_sice =  0.20000000000000001
20260709180316.815+0800:INFO : jules_sea_seaice:    z0hsea =  4.00000000000000033E-5
20260709180316.815+0800:INFO : jules_sea_seaice:    emis_sea =  0.98499999999999999
20260709180316.815+0800:INFO : jules_sea_seaice:    emis_sice =  0.97599999999999998
20260709180316.816+0800:INFO : jules_surface:    kappai =  2.0899999999999999
20260709180316.816+0800:INFO : jules_surface:    kappai_snow =  0.25600000000000001
20260709180316.816+0800:INFO : jules_sea_seaice:    kappa_seasurf =  0.5
20260709180316.816+0800:INFO : jules_sea_seaice:    SeaSalinityFactor =  0.97999999999999998
20260709180316.816+0800:INFO : jules_sea_seaice:    charnock =  1.09999999999999994E-2
20260709180316.816+0800:INFO : jules_sea_seaice:   alpham =  0.71999999999999997
20260709180316.816+0800:INFO : jules_sea_seaice:   ssalpham =  0.71999999999999997
20260709180316.816+0800:INFO : jules_sea_seaice:   alphac =  0.80000000000000004
20260709180316.816+0800:INFO : jules_sea_seaice:   ssalphac =  0.80000000000000004
20260709180316.816+0800:INFO : jules_sea_seaice:   alphab =  0.60999999999999999
20260709180316.816+0800:INFO : jules_sea_seaice:   dtice =  2.
20260709180316.816+0800:INFO : jules_sea_seaice:   ssdtice =  2.
20260709180316.816+0800:INFO : jules_sea_seaice:   dt_bare =  1.
20260709180316.816+0800:INFO : jules_sea_seaice:   dalb_bare_wet =  -7.49999999999999972E-2
20260709180316.816+0800:INFO : jules_sea_seaice:   pen_rad_frac =  0.20000000000000001
20260709180316.816+0800:INFO : jules_sea_seaice:   sw_beta =  0.59999999999999998
20260709180316.816+0800:INFO : jules_sea_seaice:   albicev_cice  =  0.78000000000000003
20260709180316.817+0800:INFO : jules_sea_seaice:   albicei_cice  =  0.35999999999999999
20260709180316.817+0800:INFO : jules_sea_seaice:   albsnowv_cice  =  0.97999999999999998
20260709180316.817+0800:INFO : jules_sea_seaice:   albsnowi_cice  =  0.69999999999999996
20260709180316.817+0800:INFO : jules_sea_seaice:   albpondv_cice  =  0.27000000000000002
20260709180316.817+0800:INFO : jules_sea_seaice:   albpondi_cice  =  7.00000000000000067E-2
20260709180316.817+0800:INFO : jules_sea_seaice:   ahmax =  0.29999999999999999
20260709180316.817+0800:INFO : jules_sea_seaice:   dalb_mlt_cice =  -7.49999999999999972E-2
20260709180316.817+0800:INFO : jules_sea_seaice:   dalb_mlts_v_cice =  -0.10000000000000001
20260709180316.817+0800:INFO : jules_sea_seaice:   dalb_mlts_i_cice =  -0.14999999999999999
20260709180316.817+0800:INFO : jules_sea_seaice:   dt_bare_cice =  1.
20260709180316.817+0800:INFO : jules_sea_seaice:   dt_snow_cice =  1.
20260709180316.817+0800:INFO : jules_sea_seaice:   pen_rad_frac_cice =  0.40000000000000002
20260709180316.817+0800:INFO : jules_sea_seaice:   sw_beta_cice =  0.59999999999999998
20260709180316.817+0800:INFO : jules_sea_seaice:   snowpatch =  2.00000000000000004E-2
20260709180316.817+0800:INFO : jules_sea_seaice:  l_iceformdrag_lupkes = T
20260709180316.817+0800:INFO : jules_sea_seaice:  l_stability_lupkes = T
20260709180316.818+0800:INFO : jules_sea_seaice:  h_freeboard_min =  0.2860
20260709180316.818+0800:INFO : jules_sea_seaice:  h_freeboard_max =  0.5340
20260709180316.818+0800:INFO : jules_sea_seaice:  beta_floe =   1.000
20260709180316.818+0800:INFO : jules_sea_seaice:  d_floe_min =   8.000
20260709180316.818+0800:INFO : jules_sea_seaice:  d_floe_max =   300.0
20260709180316.818+0800:INFO : jules_sea_seaice:  ss_floe =  0.5000
20260709180316.818+0800:INFO : jules_sea_seaice:  ce_floe =  0.2220
20260709180316.818+0800:INFO : jules_sea_seaice:  hcap_sea =   0.000
20260709180316.818+0800:INFO : jules_sea_seaice:  beta_evap =   1.000
20260709180316.818+0800:INFO : jules_sea_seaice: - - - - - - end of namelist - - - - - -
20260709180316.818+0800:INFO : jules_soil: Contents of namelist jules_soil
20260709180316.818+0800:INFO : jules_soil:    l_vg_soil =  F
20260709180316.818+0800:INFO : jules_soil:    l_dpsids_dsdz =  T
20260709180316.818+0800:INFO : jules_soil:    l_soil_sat_down =  T
20260709180316.818+0800:INFO : jules_soil:    l_holdwater =  F
20260709180316.818+0800:INFO : jules_soil:    l_bedrock =  F
20260709180316.818+0800:INFO : jules_soil:    l_tile_soil =  F
20260709180316.819+0800:INFO : jules_soil:    soilhc_method =  2
20260709180316.819+0800:INFO : jules_soil:    cs_min =  9.99999999999999955E-7
20260709180316.819+0800:INFO : jules_soil:    zsmc =  1.
20260709180316.819+0800:INFO : jules_soil:    zst =  1.
20260709180316.819+0800:INFO : jules_soil:    confrac =  0.29999999999999999
20260709180316.819+0800:INFO : jules_soil:    ns_deep =  -32768
20260709180316.819+0800:INFO : jules_soil:    hcapdeep =  -1073741824.
20260709180316.819+0800:INFO : jules_soil:    hcondeep =  -1073741824.
20260709180316.819+0800:INFO : jules_soil:    dzdeep =  -1073741824.
20260709180316.819+0800:INFO : jules_soil:    dzsoil_io =  0.10000000000000001,  0.25,  0.65000000000000002,  2.
20260709180316.819+0800:INFO : jules_soil:    dzsoil_elev =  -1.
20260709180316.819+0800:INFO : jules_soil: - - - - - - end of namelist - - - - - -
20260709180316.819+0800:INFO : jules_surface: Contents of namelist jules_surface
20260709180316.819+0800:INFO : jules_surface:    l_flake_model =  F
20260709180316.819+0800:INFO : jules_surface:    l_epot_corr =  T
20260709180316.819+0800:INFO : jules_surface:    l_point_data =  F
20260709180316.820+0800:INFO : jules_surface:    l_aggregate =  F
20260709180316.820+0800:INFO : jules_surface:    l_elev_land_ice=  F
20260709180316.820+0800:INFO : jules_surface:    l_land_ice_imp =  T
20260709180316.820+0800:INFO : jules_surface:    l_elev_lw_down=  F
20260709180316.820+0800:INFO : jules_surface:    l_anthrop_heat_src =  F
20260709180316.820+0800:INFO : jules_surface:    anthrop_heat_option =  -32768
20260709180316.820+0800:INFO : jules_surface:    anthrop_heat_mean =  -1073741824.
20260709180316.820+0800:INFO : jules_surface:    l_vary_z0m_soil =  T
20260709180316.820+0800:INFO : jules_surface:    l_urban2t =  F
20260709180316.820+0800:INFO : jules_surface:    l_mo_buoyancy_calc =  T
20260709180316.820+0800:INFO : jules_surface:    i_modiscopt =  1
20260709180316.820+0800:INFO : jules_surface:    all_tiles =  0
20260709180316.820+0800:INFO : jules_surface:    cor_mo_iter =  4
20260709180316.820+0800:INFO : jules_surface:    iscrntdiag =  2
20260709180316.820+0800:INFO : jules_surface:    i_aggregate_opt =  -32768
20260709180316.820+0800:INFO : jules_surface:    formdrag =  2
20260709180316.820+0800:INFO : jules_surface:    fd_stability_dep =  0
20260709180316.821+0800:INFO : jules_surface:    fd_hill_option =  2
20260709180316.821+0800:INFO : jules_surface:    srf_ex_cnv_gust =  1
20260709180316.821+0800:INFO : jules_surface:    orog_drag_param =  0.14999999999999999
20260709180316.821+0800:INFO : jules_surface:    beta_cnv_bl =  4.00000000000000008E-2
20260709180316.821+0800:INFO : jules_surface:    hleaf =  57000.
20260709180316.821+0800:INFO : jules_surface:    hwood =  11000.
20260709180316.821+0800:INFO : jules_surface:    beta1 =  0.82999999999999996
20260709180316.821+0800:INFO : jules_surface:    beta2 =  0.93000000000000005
20260709180316.821+0800:INFO : jules_surface:    fwe_c3 =  0.5
20260709180316.821+0800:INFO : jules_surface:    fwe_c4 =  20000.
20260709180316.821+0800:INFO : jules_surface: - - - - - - end of namelist - - - - - -
20260709180316.821+0800:INFO : jules_vegetation_mod: Contents of namelist jules_vegetation
20260709180316.821+0800:INFO : jules_vegetation_mod:   l_nrun_mid_trif =  F
20260709180316.821+0800:INFO : jules_vegetation_mod:   l_trif_init_accum =  F
20260709180316.821+0800:INFO : jules_vegetation_mod:   l_phenol =  F
20260709180316.821+0800:INFO : jules_vegetation_mod:   l_triffid =  F
20260709180316.821+0800:INFO : jules_vegetation_mod:   l_trif_eq =  F
20260709180316.822+0800:INFO : jules_vegetation_mod:   l_veg_compete =  F
20260709180316.822+0800:INFO : jules_vegetation_mod:   l_ht_compete =  F
20260709180316.822+0800:INFO : jules_vegetation_mod:   l_trif_crop =  F
20260709180316.822+0800:INFO : jules_vegetation_mod:   l_trif_biocrop =  F
20260709180316.822+0800:INFO : jules_vegetation_mod:   l_trif_fire =  F
20260709180316.822+0800:INFO : jules_vegetation_mod:   l_trait_phys =  F
20260709180316.822+0800:INFO : jules_vegetation_mod:   l_landuse =  F
20260709180316.822+0800:INFO : jules_vegetation_mod:   l_ag_expand =  F
20260709180316.822+0800:INFO : jules_vegetation_mod:   l_leaf_n_resp_fix =  F
20260709180316.822+0800:INFO : jules_vegetation_mod:   l_stem_resp_fix =  F
20260709180316.822+0800:INFO : jules_vegetation_mod:   l_scale_resp_pm =  F
20260709180316.822+0800:INFO : jules_vegetation_mod:   l_nitrogen =  F
20260709180316.822+0800:INFO : jules_vegetation_mod:   l_vegcan_soilfx =  T
20260709180316.822+0800:INFO : jules_vegetation_mod:   phenol_period =  -32768
20260709180316.822+0800:INFO : jules_vegetation_mod:   triffid_period =  -32768
20260709180316.822+0800:INFO : jules_vegetation_mod:   l_bvoc_emis =  F
20260709180316.822+0800:INFO : jules_vegetation_mod:   l_o3_damage =  F
20260709180316.823+0800:INFO : jules_vegetation_mod:   l_vegdrag_pft =  5*F
20260709180316.823+0800:INFO : jules_vegetation_mod:   l_rsl_scalar =  F
20260709180316.823+0800:INFO : jules_vegetation_mod:   can_model =  4
20260709180316.823+0800:INFO : jules_vegetation_mod:   can_rad_mod =  6
20260709180316.823+0800:INFO : jules_vegetation_mod:   ilayers =  10
20260709180316.823+0800:INFO : jules_vegetation_mod:   frac_min =  -1073741824.
20260709180316.823+0800:INFO : jules_vegetation_mod:   frac_seed =  -1073741824.
20260709180316.823+0800:INFO : jules_vegetation_mod:   pow =  -1073741824.
20260709180316.823+0800:INFO : jules_vegetation_mod:   cd_leaf =  -1073741824.
20260709180316.823+0800:INFO : jules_vegetation_mod:   c1_usuh =  -1073741824.
20260709180316.823+0800:INFO : jules_vegetation_mod:   c2_usuh =  -1073741824.
20260709180316.823+0800:INFO : jules_vegetation_mod:   c3_usuh =  -1073741824.
20260709180316.823+0800:INFO : jules_vegetation_mod:   stanton_leaf =  -1073741824.
20260709180316.823+0800:INFO : jules_vegetation_mod:   photo_model =  1
20260709180316.823+0800:INFO : jules_vegetation_mod:   photo_acclim_model =  -32768
20260709180316.823+0800:INFO : jules_vegetation_mod:   photo_act_model =  -32768
20260709180316.823+0800:INFO : jules_vegetation_mod:   photo_jv_model =  -32768
20260709180316.823+0800:INFO : jules_vegetation_mod:   n_alloc_jmax =  -1073741824.
20260709180316.824+0800:INFO : jules_vegetation_mod:   n_alloc_vcmax =  -1073741824.
20260709180316.824+0800:INFO : jules_vegetation_mod:   dsj_coef =  3*-1073741824.
20260709180316.824+0800:INFO : jules_vegetation_mod:   dsv_coef =  3*-1073741824.
20260709180316.824+0800:INFO : jules_vegetation_mod:   jv25_coef =  3*-1073741824.
20260709180316.824+0800:INFO : jules_vegetation_mod:   act_j_coef =  3*-1073741824.
20260709180316.824+0800:INFO : jules_vegetation_mod:   act_v_coef =  3*-1073741824.
20260709180316.824+0800:INFO : jules_vegetation_mod:   n_day_photo_acclim =  -1073741824.
20260709180316.824+0800:INFO : jules_vegetation_mod:   stomata_model =  1
20260709180316.824+0800:INFO : jules_vegetation_mod:   l_sugar =  F
20260709180316.824+0800:INFO : jules_vegetation_mod:   l_red =  F
20260709180316.824+0800:INFO : jules_vegetation_mod: - - - - - - end of namelist - - - - - -
20260709180316.824+0800:INFO : jules_urban: Contents of namelist jules_urban
20260709180316.824+0800:INFO : jules_urban:   anthrop_heat_scale =  -1073741824.
20260709180316.824+0800:INFO : jules_urban:   l_moruses_albedo =  F
20260709180316.824+0800:INFO : jules_urban:   l_moruses_emissivity =  F
20260709180316.824+0800:INFO : jules_urban:   l_moruses_rough =  F
20260709180316.824+0800:INFO : jules_urban:   l_moruses_storage =  F
20260709180316.824+0800:INFO : jules_urban:   l_moruses_storage_thin =  F
20260709180316.825+0800:INFO : jules_urban:   l_moruses_macdonald =  F
20260709180316.825+0800:INFO : jules_urban: - - - - - - end of namelist - - - - - -
20260709180316.833+0800:INFO : pftparm: Contents of namelist jules_pftparm
20260709180316.833+0800:INFO : pftparm:   a_wl =  2*0.65000000000000002,  2*5.0000000000000001E-3,  0.10000000000000001
20260709180316.833+0800:INFO : pftparm:   a_ws =  2*10.,  2*1.,  10.
20260709180316.833+0800:INFO : pftparm:   act_jmax =  5*50000.
20260709180316.833+0800:INFO : pftparm:   act_vcmax =  5*72000.
20260709180316.833+0800:INFO : pftparm:   aef =  5*-1073741824.
20260709180316.833+0800:INFO : pftparm:   albsnc_max =  2*0.25,  2*0.59999999999999998,  0.40000000000000002
20260709180316.833+0800:INFO : pftparm:   albsnc_min =  2*0.29999999999999999,  3*0.80000000000000004
20260709180316.833+0800:INFO : pftparm:   albsnf_max =  5*-1073741824.
20260709180316.833+0800:INFO : pftparm:   alpha =  3*8.00000000000000017E-2,  4.00000000000000008E-2,  8.00000000000000017E-2
20260709180316.834+0800:INFO : pftparm:   alpha_elec =  5*-1073741824.
20260709180316.834+0800:INFO : pftparm:   alnir =  0.34100000000000003,  0.27200000000000002,  0.36899999999999999,  0.36799999999999999,  0.39500000000000002
20260709180316.834+0800:INFO : pftparm:   alpar =  5.70000000000000021E-2,  4.10000000000000017E-2,  7.09999999999999937E-2,  8.30000000000000043E-2,  7.39999999999999963E-2
20260709180316.834+0800:INFO : pftparm:   avg_ba =  5*-1073741824.
20260709180316.834+0800:INFO : pftparm:   b_wl =  5*1.667
20260709180316.834+0800:INFO : pftparm:   c3 =  3*1,  0,  1
20260709180316.834+0800:INFO : pftparm:   can_struct_a =  5*1.
20260709180316.834+0800:INFO : pftparm:   catch0 =  5*0.5
20260709180316.834+0800:INFO : pftparm:   ccleaf_max =  5*-1073741824.
20260709180316.834+0800:INFO : pftparm:   ccleaf_min =  5*-1073741824.
20260709180316.834+0800:INFO : pftparm:   ccwood_max =  5*-1073741824.
20260709180316.834+0800:INFO : pftparm:   ccwood_min =  5*-1073741824.
20260709180316.834+0800:INFO : pftparm:   ci_st =  5*-1073741824.
20260709180316.834+0800:INFO : pftparm:   dcatch_dlai =  5*5.00000000000000028E-2
20260709180316.834+0800:INFO : pftparm:   deact_vcmax =  5*-1073741824.
20260709180316.834+0800:INFO : pftparm:   deact_vcmax =  5*-1073741824.
20260709180316.835+0800:INFO : pftparm:   dfp_dcuo =  5*-1073741824.
20260709180316.835+0800:INFO : pftparm:   dgl_dm =  5*0.
20260709180316.835+0800:INFO : pftparm:   dgl_dt =  2*9.,  2*0.,  9.
20260709180316.835+0800:INFO : pftparm:   dqcrit =  8.99999999999999967E-2,  5.99999999999999978E-2,  0.10000000000000001,  7.49999999999999972E-2,  0.10000000000000001
20260709180316.835+0800:INFO : pftparm:   ds_jmax =  5*646.
20260709180316.835+0800:INFO : pftparm:   ds_vcmax =  5*649.
20260709180316.835+0800:INFO : pftparm:   dust_veg_scj =  2*0.,  2*1.,  0.5
20260709180316.835+0800:INFO : pftparm:   dz0v_dh =  2*5.00000000000000028E-2,  3*0.10000000000000001
20260709180316.835+0800:INFO : pftparm:   emis_pft =  0.97999999999999998,  0.98999999999999999,  3*0.97999999999999998
20260709180316.835+0800:INFO : pftparm:   eta_sl =  5*1.00000000000000002E-2
20260709180316.835+0800:INFO : pftparm:   f0 =  2*0.875,  0.90000000000000002,  0.80000000000000004,  0.90000000000000002
20260709180316.835+0800:INFO : pftparm:   fd =  3*1.49999999999999994E-2,  2.50000000000000014E-2,  1.49999999999999994E-2
20260709180316.835+0800:INFO : pftparm:   fef_bc =  5*-1073741824.
20260709180316.835+0800:INFO : pftparm:   fef_ch4 =  5*-1073741824.
20260709180316.835+0800:INFO : pftparm:   fef_co =  5*-1073741824.
20260709180316.835+0800:INFO : pftparm:   fef_co2 =  5*-1073741824.
20260709180316.835+0800:INFO : pftparm:   fef_nox =  5*-1073741824.
20260709180316.836+0800:INFO : pftparm:   fef_oc =  5*-1073741824.
20260709180316.836+0800:INFO : pftparm:   fef_so2 =  5*-1073741824.
20260709180316.836+0800:INFO : pftparm:   fef_c2h4 =  5*-1073741824.
20260709180316.836+0800:INFO : pftparm:   fef_c2h6 =  5*-1073741824.
20260709180316.836+0800:INFO : pftparm:   fef_c3h8 =  5*-1073741824.
20260709180316.836+0800:INFO : pftparm:   fef_hcho =  5*-1073741824.
20260709180316.836+0800:INFO : pftparm:   fef_mecho =  5*-1073741824.
20260709180316.836+0800:INFO : pftparm:   fef_nh3 =  5*-1073741824.
20260709180316.836+0800:INFO : pftparm:   fef_dms =  5*-1073741824.
20260709180316.836+0800:INFO : pftparm:   fire_mort =  5*-1073741824.
20260709180316.836+0800:INFO : pftparm:   fl_o3_ct =  5*-1073741824.
20260709180316.836+0800:INFO : pftparm:   fsmc_of =  5*0.
20260709180316.836+0800:INFO : pftparm:   fsmc_p0 =  5*0.59999999999999998
20260709180316.836+0800:INFO : pftparm:   sug_g0 =  5*-1073741824.
20260709180316.836+0800:INFO : pftparm:   g1_stomata =  5*-1073741824.
20260709180316.836+0800:INFO : pftparm:   g_leaf_0 =  5*0.25
20260709180316.836+0800:INFO : pftparm:   glmin =  5*9.99999999999999955E-7
20260709180316.837+0800:INFO : pftparm:   gpp_st =  5*-1073741824.
20260709180316.837+0800:INFO : pftparm:   sug_grec =  5*-1073741824.
20260709180316.837+0800:INFO : pftparm:   gsoil_f =  5*1.
20260709180316.837+0800:INFO : pftparm:   hw_sw =  5*0.5
20260709180316.837+0800:INFO : pftparm:   ief =  5*-1073741824.
20260709180316.837+0800:INFO : pftparm:   infil_f =  2*4.,  3*2.
20260709180316.837+0800:INFO : pftparm:   jv25_ratio =  5*-1073741824.
20260709180316.837+0800:INFO : pftparm:   kext =  2*0.5,  2*1.,  0.5
20260709180316.837+0800:INFO : pftparm:   kn =  5*0.78000000000000003
20260709180316.837+0800:INFO : pftparm:   knl =  5*0.20000000000000001
20260709180316.837+0800:INFO : pftparm:   kpar =  5*0.5
20260709180316.837+0800:INFO : pftparm:   lai_alb_lim =  5*5.0000000000000001E-3
20260709180316.837+0800:INFO : pftparm:   lma =  8.2400000000000001E-2,  0.2263,  4.9799999999999997E-2,  0.13700000000000001,  6.95000000000000062E-2
20260709180316.837+0800:INFO : pftparm:   mef =  5*-1073741824.
20260709180316.837+0800:INFO : pftparm:   neff =  3*8.00000000000000038E-4,  4.00000000000000019E-4,  8.00000000000000038E-4
20260709180316.838+0800:INFO : pftparm:   nl0 =  4.00000000000000008E-2,  2.99999999999999989E-2,  5.99999999999999978E-2,  2*2.99999999999999989E-2
20260709180316.838+0800:INFO : pftparm:   nmass =  2.10000000000000013E-2,  1.14999999999999998E-2,  2.18999999999999993E-2,  1.31000000000000005E-2,  2.18999999999999993E-2
20260709180316.838+0800:INFO : pftparm:   nr_nl =  5*1.
20260709180316.838+0800:INFO : pftparm:   ns_nl =  2*0.10000000000000001,  2*1.,  0.10000000000000001
20260709180316.838+0800:INFO : pftparm:   nsw =  7.1999999999999998E-3,  8.30000000000000009E-3,  1.60399999999999987E-2,  2.01999999999999992E-2,  7.1999999999999998E-3
20260709180316.838+0800:INFO : pftparm:   nr =  1.7260000000000001E-2,  7.83999999999999975E-3,  1.61999999999999991E-2,  8.39999999999999948E-3,  1.7260000000000001E-2
20260709180316.838+0800:INFO : pftparm:   omega =  0.10100000000000001,  8.30000000000000043E-2,  0.13200000000000001,  0.13500000000000001,  0.115
20260709180316.838+0800:INFO : pftparm:   omnir =  0.78800000000000003,  0.54500000000000004,  0.86399999999999999,  0.78700000000000003,  0.78500000000000003
20260709180316.838+0800:INFO : pftparm:   orient =  5*0
20260709180316.838+0800:INFO : pftparm:   q10_leaf =  5*2.
20260709180316.838+0800:INFO : pftparm:   r_grow =  5*0.25
20260709180316.838+0800:INFO : pftparm:   rootd_ft =  3.,  1.,  3*0.5
20260709180316.838+0800:INFO : pftparm:   sigl =  3.74999999999999986E-2,  0.10000000000000001,  2.50000000000000014E-2,  2*5.00000000000000028E-2
20260709180316.838+0800:INFO : pftparm:   tef =  5*-1073741824.
20260709180316.838+0800:INFO : pftparm:   tleaf_of =  273.14999999999998,  243.15000000000001,  2*258.14999999999998,  243.15000000000001
20260709180316.838+0800:INFO : pftparm:   tlow =  0.,  -5.,  0.,  13.,  0.
20260709180316.839+0800:INFO : pftparm:   tupp =  36.,  31.,  36.,  45.,  36.
20260709180316.839+0800:INFO : pftparm:   vint =  5.7300000000000004,  6.3200000000000003,  6.4199999999999999,  0.,  14.710000000000001
20260709180316.839+0800:INFO : pftparm:   vsl =  29.809999999999999,  18.149999999999999,  40.960000000000001,  10.24,  23.149999999999999
20260709180316.839+0800:INFO : pftparm:   sug_yg =  5*-1073741824.
20260709180316.839+0800:INFO : pftparm:   z0v =  2*1.1000000000000001,  2*0.22,  1.
20260709180316.839+0800:INFO : pftparm:   sox_a =  5*-1073741824.
20260709180316.839+0800:INFO : pftparm:   sox_p50 =  5*-1073741824.
20260709180316.839+0800:INFO : pftparm:   sox_rp_min =  5*-1073741824.
20260709180316.839+0800:INFO : pftparm: - - - - - - end of namelist - - - - - -
20260709180316.839+0800:INFO : nvegparm: Contents of namelist jules_nvegparm
20260709180316.839+0800:INFO : nvegparm:   albsnc_nvg =  0.40000000000000002,  3*0.80000000000000004
20260709180316.839+0800:INFO : nvegparm:   albsnf_nvg =  0.17999999999999999,  0.12,  -1.,  0.75
20260709180316.839+0800:INFO : nvegparm:   albsnf_nvgl =
20260709180316.839+0800:INFO : nvegparm:   albsnf_nvgu =
20260709180316.839+0800:INFO : nvegparm:   catch_nvg =  0.5,  3*0.
20260709180316.839+0800:INFO : nvegparm:   ch_nvg =  280000.,  21100000.,  2*0.
20260709180316.839+0800:INFO : nvegparm:   emis_nvg =  0.96999999999999997,  0.98499999999999999,  0.90000000000000002,  0.98999999999999999
20260709180316.839+0800:INFO : nvegparm:   gs_nvg =  2*0.,  1.00000000000000002E-2,  1000000.
20260709180316.839+0800:INFO : nvegparm:   infil_nvg =  0.10000000000000001,  0.,  0.5,  0.
20260709180316.840+0800:INFO : nvegparm:   vf_nvg =  2*1.,  2*0.
20260709180316.840+0800:INFO : nvegparm:   z0_nvg =  1.,  1.00000000000000005E-4,  1.00000000000000002E-3,  5.0000000000000001E-4
20260709180316.840+0800:INFO : nvegparm: - - - - - - end of namelist - - - - - -
20260709180316.840+0800:INFO : C_Z0H_Z0M_PRINT: Contents of c_z0h_z0m
20260709180316.840+0800:INFO : C_Z0H_Z0M_PRINT:   z0h_z0m_classic =  9*-1073741824.
20260709180316.840+0800:INFO : C_Z0H_Z0M_PRINT:   z0h_z0m =  2*1.,  3*1.00000000000000002E-2,  9.99999999999999955E-8,  0.25,  2*0.20000000000000001
20260709180316.840+0800:INFO : C_Z0H_Z0M_PRINT: - - - - - - end of c_z0h_z0m - - - - - -
20260709180316.840+0800:INFO : Initialising I/O context

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'tgt_indices' at line 901 in file 'halo_comms_mod.F90' with bounds 1:0.

lib-4961 : WARNING 
  Subscript 1 is out of range for dimension 1 for array
  'tgt_indices' at line 849 in file 'halo_comms_mod.F90' with bounds 1:0.
20260709180316.843+0800:INFO : XIOS domain ['node'] is already registered.
20260709180316.843+0800:INFO : XIOS domain ['edge'] is already registered.
20260709180316.843+0800:INFO : XIOS domain ['face'] is already registered.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
WARNING : you are using the zoom_axis interface. zoom_domain is deprecated, replace it with extract_axis.
	 Calls to xios_set/get_zoom_axis_attr must be replaced with xios_set/get_extract_axis_attr in your model.
20260709180316.895+0800:INFO : Initialise surface altitude: Create surface altitude.
20260709180316.895+0800:INFO : Initialise surface altitude: No initialisation option set for orography.
[New Thread 0x15554f2a56c0 (LWP 636821)]
..
[New Thread 0x154d5f1a76c0 (LWP 637075)]
20260709180316.998+0800:INFO : Min/max srf_alt_w3 =   0.00000000E+00  0.00000000E+00
20260709180316.999+0800:INFO : Min/max srf_alt_w0 =   0.00000000E+00  0.00000000E+00
20260709180317.000+0800:INFO : assign_orography_field: Flat surface requested.
20260709180317.000+0800:INFO : assign_orography_field: Flat surface requested.
20260709180317.005+0800:INFO : GungHo: Creating prognostics...
20260709180317.006+0800:INFO : Create physics prognostics
20260709180317.017+0800:INFO : Physics field collections initialised
20260709180317.017+0800:INFO : Gungho: Initialising prognostic fields
20260709180317.034+0800:INFO : Gungho: Initialised prognostic fields
20260709180317.040+0800:INFO : Field Min/max u_in_w3 =      -8.75000000      -4.61000000
20260709180317.040+0800:INFO : Field Min/max v_in_w3 =       0.00000000       0.00000000
20260709180317.040+0800:INFO : Field Min/max w_in_wth =      -0.00647111       0.00000000
20260709180317.041+0800:INFO : Gungho: No ancillaries to be read for this run.
20260709180317.042+0800:INFO : semi_implicit_timestep: initialised timestepping algorithm
20260709180317.043+0800:S1:INFO : Start of timestep 1

Thread 1 "lfric_atm_cce20" received signal SIGSEGV, Segmentation fault.
0x0000000009c0c7fd in xios::CNetCdfInterface::inqDimId(int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int&) ()
Missing separate debuginfos, use: zypper install glibc-debuginfo-2.38-150600.14.49.1.x86_64 libstdc++6-debuginfo-15.2.0+git10201-150000.1.9.1.x86_64 libgfortran4-debuginfo-7.5.0+r278197-150000.4.44.1.x86_64 libgcc_s1-debuginfo-15.2.0+git10201-150000.1.9.1.x86_64 libcurl4-debuginfo-8.14.1-150700.7.17.1.x86_64 libatomic1-debuginfo-15.2.0+git10201-150000.1.9.1.x86_64 libgfortran5-debuginfo-15.2.0+git10201-150000.1.9.1.x86_64 libnghttp2-14-debuginfo-1.64.0-150700.3.3.1.x86_64 libidn2-0-debuginfo-2.2.0-3.6.1.x86_64 libssh4-debuginfo-0.9.8-150600.11.12.1.x86_64 libpsl5-debuginfo-0.20.1-150000.3.3.1.x86_64 libopenssl3-debuginfo-3.2.3-150700.5.36.1.x86_64 libldap-2_4-2-debuginfo-2.4.46-150600.25.3.1.x86_64 libbrotlidec1-debuginfo-1.0.7-150200.3.5.1.x86_64 libjson-c5-debuginfo-0.16-150600.1.4.x86_64 libunistring2-debuginfo-0.9.10-1.1.x86_64 libjitterentropy3-debuginfo-3.4.1-150000.1.12.1.x86_64 libsasl2-3-debuginfo-2.1.28-150600.7.14.1.x86_64 libbrotlicommon1-debuginfo-1.0.7-150200.3.5.1.x86_64 libnl3-200-debuginfo-3.9.0-150600.15.4.4.x86_64
(gdb) bt
#0  0x0000000009c0c7fd in xios::CNetCdfInterface::inqDimId(int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int&) ()
#1  0x0000000009a61d2b in xios::CONetCDF4::addVariable(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool) ()
#2  0x0000000009a1e834 in xios::CNc4DataOutput::writeUnstructuredDomainUgrid(xios::CDomain*) ()
#3  0x0000000009a12af4 in xios::CNc4DataOutput::writeDomain_(xios::CDomain*) ()
#4  0x0000000009b444f2 in xios::CDataOutput::writeFieldGrid(xios::CField*) ()
#5  0x000000000969f05a in xios::CFile::createHeader() ()
#6  0x000000000969d393 in xios::CFile::checkWriteFile() ()
#7  0x00000000096a97c4 in xios::CFileWriterStoreFilter::onInputReady(std::vector<std::shared_ptr<xios::CDataPacket>, std::allocator<std::shared_ptr<xios::CDataPacket> > >) ()
#8  0x00000000099a27f4 in xios::CInputPin::setInput(unsigned long, std::shared_ptr<xios::CDataPacket>) ()
#9  0x0000000009a6affc in xios::COutputPin::deliverOuput(std::shared_ptr<xios::CDataPacket>) ()
#10 0x0000000009a6aaad in xios::COutputPin::onOutputReady(std::shared_ptr<xios::CDataPacket>) ()
#11 0x0000000009b7c9bb in xios::CFilter::onInputReady(std::vector<std::shared_ptr<xios::CDataPacket>, std::allocator<std::shared_ptr<xios::CDataPacket> > >) ()
#12 0x00000000099a27f4 in xios::CInputPin::setInput(unsigned long, std::shared_ptr<xios::CDataPacket>) ()
#13 0x0000000009a6affc in xios::COutputPin::deliverOuput(std::shared_ptr<xios::CDataPacket>) ()
#14 0x0000000009a6aaad in xios::COutputPin::onOutputReady(std::shared_ptr<xios::CDataPacket>) ()
#15 0x0000000009b7c9bb in xios::CFilter::onInputReady(std::vector<std::shared_ptr<xios::CDataPacket>, std::allocator<std::shared_ptr<xios::CDataPacket> > >) ()
#16 0x00000000099a27f4 in xios::CInputPin::setInput(unsigned long, std::shared_ptr<xios::CDataPacket>) ()
#17 0x0000000009a6affc in xios::COutputPin::deliverOuput(std::shared_ptr<xios::CDataPacket>) ()
#18 0x0000000009a6aaad in xios::COutputPin::onOutputReady(std::shared_ptr<xios::CDataPacket>) ()
#19 0x0000000009b7c9bb in xios::CFilter::onInputReady(std::vector<std::shared_ptr<xios::CDataPacket>, std::allocator<std::shared_ptr<xios::CDataPacket> > >) ()
#20 0x00000000099a27f4 in xios::CInputPin::setInput(unsigned long, std::shared_ptr<xios::CDataPacket>) ()
#21 0x0000000009a6affc in xios::COutputPin::deliverOuput(std::shared_ptr<xios::CDataPacket>) ()
#22 0x0000000009a6aaad in xios::COutputPin::onOutputReady(std::shared_ptr<xios::CDataPacket>) ()
#23 0x0000000009b7c9bb in xios::CFilter::onInputReady(std::vector<std::shared_ptr<xios::CDataPacket>, std::allocator<std::shared_ptr<xios::CDataPacket> > >) ()
#24 0x00000000099a27f4 in xios::CInputPin::setInput(unsigned long, std::shared_ptr<xios::CDataPacket>) ()
#25 0x0000000009a6affc in xios::COutputPin::deliverOuput(std::shared_ptr<xios::CDataPacket>) ()
#26 0x0000000009a6aaad in xios::COutputPin::onOutputReady(std::shared_ptr<xios::CDataPacket>) ()
#27 0x0000000009b7c9bb in xios::CFilter::onInputReady(std::vector<std::shared_ptr<xios::CDataPacket>, std::allocator<std::shared_ptr<xios::CDataPacket> > >) ()
#28 0x00000000099a27f4 in xios::CInputPin::setInput(unsigned long, std::shared_ptr<xios::CDataPacket>) ()
#29 0x0000000009a6affc in xios::COutputPin::deliverOuput(std::shared_ptr<xios::CDataPacket>) ()
#30 0x0000000009a6aaad in xios::COutputPin::onOutputReady(std::shared_ptr<xios::CDataPacket>) ()
#31 0x0000000009b7c9bb in xios::CFilter::onInputReady(std::vector<std::shared_ptr<xios::CDataPacket>, std::allocator<std::shared_ptr<xios::CDataPacket> > >) ()
#32 0x00000000099a27f4 in xios::CInputPin::setInput(unsigned long, std::shared_ptr<xios::CDataPacket>) ()
#33 0x0000000009a6affc in xios::COutputPin::deliverOuput(std::shared_ptr<xios::CDataPacket>) ()
#34 0x0000000009a6aaad in xios::COutputPin::onOutputReady(std::shared_ptr<xios::CDataPacket>) ()
#35 0x0000000009a009e8 in void xios::CModelToClientSourceFilter::streamData<2>(xios::CDate, xios::CArray<double, 2> const&) ()
#36 0x0000000009b7893d in void xios::CField::setData<2>(xios::CArray<double, 2> const&) ()
#37 0x00000000098e7514 in cxios_write_data_k82_hdl ()
#38 0x00000000098e78c9 in cxios_write_data_k82 ()
#39 0x0000000008fe9bcb in xios_send_field_r8_2d$idata_ ()
#40 0x00000000009464b4 in write_field_generic (field_name=..., field_proxy=0x7ffffff90160) at lfric_xios_write_mod.F90:148
--Type <RET> for more, q to quit, c to continue without paging--
#41 0x00000000006d5326 in write_field (this=0x7ffffff99fc0, field_name=...) at field/field_real64_mod.f90:603
#42 0x0000000006c62e6a in external_forcing_alg (config=..., derived_fields=..., u=..., theta=..., exner=..., exner_in_wth=..., rho=..., mr_n=..., cloud_fields=..., 
    twod_mesh=0x13312100, dt=1200, time_now=1200, dtheta_forcing=..., du_forcing=..., dmv_forcing=..., dmcl_forcing=..., dcfl_forcing=..., dbcf_forcing=..., 
    theta_forcing_done=.TRUE., vapour_forcing_done=.FALSE., wind_forcing_done=.FALSE.) at algorithm/physics/external_forcing_alg_mod.f90:42
#43 0x0000000004d03cc2 in slow_physics (modeldb=..., du=..., dtheta=..., mr=..., theta=..., u=..., rho=..., exner=..., moist_dyn=..., mr_n=..., derived_fields=..., 
    radiation_fields=..., microphysics_fields=..., electric_fields=..., orography_fields=..., turbulence_fields=..., convection_fields=..., cloud_fields=..., 
    surface_fields=..., soil_fields=..., snow_fields=..., chemistry_fields=..., aerosol_fields=..., clock=0x13448900, dt=1200, dtemp_encorr=0, mesh=0x133157c0, 
    twod_mesh=0x13312100) at algorithm/physics/slow_physics_alg_mod.f90:275
#44 0x0000000001df69a6 in run_step (self=..., modeldb=..., u=..., rho=..., theta=..., exner=..., mr=..., moist_dyn=..., adv_tracer_all_outer=..., adv_tracer_last_outer=..., 
    con_tracer_all_outer=..., con_tracer_last_outer=..., prognostic_fields=..., moisture_fields=..., derived_fields=..., radiation_fields=..., microphysics_fields=..., 
    electric_fields=..., orography_fields=..., turbulence_fields=..., convection_fields=..., cloud_fields=..., surface_fields=..., soil_fields=..., snow_fields=..., 
    chemistry_fields=..., aerosol_fields=..., stph_fields=..., lbc_fields=..., model_clock=0x13448900, dtemp_encorr=0, spt_spectral_coeffc=<not allocated>, 
    spt_spectral_coeffs=<not allocated>, spt_power_law=<not allocated>, skeb_spectral_coeffc=<not allocated>, skeb_spectral_coeffs=<not allocated>, 
    skeb_power_law=<not allocated>, mesh=0x133157c0, twod_mesh=0x13312100) at algorithm/timestepping/semi_implicit_timestep_alg_mod.f90:467
#45 0x0000000001de5f1b in semi_implicit_alg_step (self=0x14581b80, modeldb=...) at algorithm/timestepping/semi_implicit_timestep_alg_mod.f90:212
#46 0x00000000006267a6 in gungho_step (mesh=0x133157c0, twod_mesh=0x13312100, modeldb=..., model_clock=0x13448900) at driver/gungho_step_mod.f90:163
#47 0x000000000055fb71 in step (modeldb=...) at driver/gungho_driver_mod.F90:497
#48 0x000000000041d010 in lfric_atm () at lfric_atm.F90:108
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