buildbook_instructions.md

Build the bookdown

All commits to the main branch on Github automatically trigger a bookdown build and deployment to Pages automatically - you only need to do the steps below to render the HTML locally. The rendered pages can be found on the gh-pages branch.

install bookdown

install.packages("renv")
renv::restore()

# alternatively
# install.packages(c("bookdown", "downlit", "xml2"))

open project

open the .Rproj file and in the history panel of Rstudio you will see the build tab. Build Book from there.

Or, on the command line run:

./build.sh

Alternatively, in the R console run:

bookdown::render_book("index.Rmd")

Add boxes in your pages

write your code in a block assigning any style described in style.css file. The options available are rationale or challenge but you can add any other style you want. Write your code as follow

#### Why do we need to do this?  {- .rationale}

Clustering the cells will allow you to visualise the variability of your data, can help to segregate cells into cell types.   

####  {-}