regen docs

Author: rmflight

docs/articles/command_line_interface.html

@@ -43,7 +43,7 @@ install.packages("docopt")
 
 cli_location = system.file("exec", package = "categoryCompare2")
 cli_location
-#> [1] "/tmp/RtmpaMl5II/temp_libpath1bcb8589fa92c/categoryCompare2/exec"
+#> [1] "/tmp/Rtmp34MAZU/temp_libpath2269b7baf8d9/categoryCompare2/exec"
 dir(cli_location)
 #> [1] "categoryCompare2.R"     "create_annotations.R"   "feature_files_2_json.R"
 #> [4] "filter_and_group.R"     "run_enrichment.R"

docs/articles/command_line_interface.md

@@ -2,8 +2,8 @@
 
 ## categoryCompare2: Alternative Visualization
 
-Authored by: **Robert M Flight** `<rflight79@gmail.com>` on 2026-04-30
-18:32:38.732368
+Authored by: **Robert M Flight** `<rflight79@gmail.com>` on 2026-05-01
+09:23:54.921927
 
 ### Introduction
 

docs/articles/gsea.html

@@ -6,7 +6,7 @@ articles:
   gsea: gsea.html
   v2_guide: v2_guide.html
   v2_visnetwork_guide: v2_visnetwork_guide.html
-last_built: 2026-04-30T22:24Z
+last_built: 2026-05-01T13:18Z
 urls:
   reference: https://moseleybioinformaticslab.github.io/categoryCompare2/reference
   article: https://moseleybioinformaticslab.github.io/categoryCompare2/articles

docs/articles/v2_guide.html

@@ -7,7 +7,7 @@ evaluation so that we can define appropriate expressions.
 ## Usage
 
 ``` r
-multi_query_list(list_to_query, ...)
+multi_query_list(list_to_query, queries)
 ```
 
 ## Arguments
@@ -16,9 +16,9 @@ multi_query_list(list_to_query, ...)
 
   the list to run the query on
 
-- ...:
+- queries:
 
-  the expressions that do the queries
+  the expressions that do the queries (as rlang::enquos)
 
 ## Value