abaco/pyproject.toml at main · Multiomics-Analytics-Group/abaco · GitHub

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[project]
name = "abaco"
description = "Batch Effect Correction framework for metagenomic data"
authors = [
    { name = "Edir Sebastián Vidal Castro"},
    { name = "Angel L. P." },
    { name = "Henry Webel" },
    { name = "Atieh Gharib" },
    { name = "Juliana Assis" },
    { name = "Sebastián Ayala-Ruano" },
    { name = "Alberto Santos", email = "albsad@dtu.dk" }
]
dynamic = [
  "version",
  "dependencies",
]
readme = "README.md"
requires-python = ">=3.11"
classifiers = [
  "Programming Language :: Python :: 3.11",
  "Programming Language :: Python :: 3.12",
  "Operating System :: OS Independent",
]
license = "MIT" # https://choosealicense.com/


[tool.setuptools.dynamic]
dependencies = {file = ["requirements.txt"]}


[project.urls]
"Bug Tracker" = "https://github.com/Multiomics-Analytics-Group/abaco/issues"
homepage = "https://github.com/Multiomics-Analytics-Group/abaco"
repository = "https://github.com/Multiomics-Analytics-Group/abaco"
documentation = "https://mona-abaco.readthedocs.io"


[project.optional-dependencies]
# for building docs locally and readthedocs
docs = [
  "sphinx",
  "sphinx-book-theme",
  "myst-nb",
  "ipywidgets",
  "sphinx-new-tab-link!=0.2.2",
  "jupytext",
  "sphinx-copybutton",
  "anndata"
]
# local development options
dev = [
  "black[jupyter]",
  "ruff",
  "pytest",
  "ipykernel"
]


[tool.ruff.lint]
extend-select = ["E", "W", "F"] #, "B"]
ignore = ["E501",]


[tool.isort]
profile = "black"


[build-system]
build-backend = "setuptools.build_meta"
requires = ["setuptools>=64", "setuptools_scm>=8"]


[tool.setuptools_scm]
fallback_version = "0.0.0"