Cartridge genotype plane: persist population genotype priors on a cartridge - #7

Merged

MuteJester merged 16 commits into

masterfrom

genotype-cartridge-plane

Jun 17, 2026

Commits on Jun 17, 2026

feat(genotype): add PopulationGenotypeModel plane with shape validation
MuteJester
committed
feat(genotype): canonical content_checksum for PopulationGenotypeModel
MuteJester
committed
feat(genotype): add DataConfig.genotype_priors plane + checksum shim
MuteJester
committed
feat(genotype): manifest models.genotype_priors block
MuteJester
committed
feat(genotype): harden plane validation (gene-key strings, ChainType normalizer, allow_nonfunctional bool)
MuteJester
committed
feat(genotype): genotype-level prior_provenance + to_metadata
MuteJester
committed
feat(genotype): Genotype.sample consumes cartridge genotype plane (catalogue alleles)
MuteJester
committed
feat(genotype): inject cartridge plane novels as draw candidates, export carried-only
MuteJester
committed
fix(genotype): reject integer include_cartridge_novel_alleles; deepcopy carried novels
MuteJester
committed
feat(genotype): PopulationGenotypeModel.from_genotypes pure estimator
MuteJester
committed
feat(genotype): builder set_genotype_priors + estimate_genotype_priors
MuteJester
committed
docs(genotype): cartridge genotype plane guide + end-to-end tests
MuteJester
committed
test(genotype): allow estimate_genotype_priors in builder estimator pin
MuteJester
committed
fix(genotype): estimator novel round-trip, completeness guard, all-None subject check, order-independent draws
MuteJester
committed
fix(genotype): harden estimator + direct-plane trust boundary (critic round)
MuteJester
committed
fix(genotype): input-type hardening + manifest robustness (critic round 2)
MuteJester
committed

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Cartridge genotype plane: persist population genotype priors on a cartridge - #7

Cartridge genotype plane: persist population genotype priors on a cartridge#7
MuteJester merged 16 commits into
masterfrom
genotype-cartridge-plane

Commits on Jun 17, 2026

feat(genotype): add PopulationGenotypeModel plane with shape validation

feat(genotype): canonical content_checksum for PopulationGenotypeModel

feat(genotype): add DataConfig.genotype_priors plane + checksum shim

feat(genotype): manifest models.genotype_priors block

feat(genotype): harden plane validation (gene-key strings, ChainType normalizer, allow_nonfunctional bool)

feat(genotype): genotype-level prior_provenance + to_metadata

feat(genotype): Genotype.sample consumes cartridge genotype plane (catalogue alleles)

feat(genotype): inject cartridge plane novels as draw candidates, export carried-only

fix(genotype): reject integer include_cartridge_novel_alleles; deepcopy carried novels

feat(genotype): PopulationGenotypeModel.from_genotypes pure estimator

feat(genotype): builder set_genotype_priors + estimate_genotype_priors

docs(genotype): cartridge genotype plane guide + end-to-end tests

test(genotype): allow estimate_genotype_priors in builder estimator pin

fix(genotype): estimator novel round-trip, completeness guard, all-None subject check, order-independent draws

fix(genotype): harden estimator + direct-plane trust boundary (critic round)

fix(genotype): input-type hardening + manifest robustness (critic round 2)