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Copy file name to clipboardExpand all lines: PW45_2026_Boston/Projects/AutomaticSegmentationOfPriorityCollectionsFromImagingDataCommons/README.md
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@@ -78,12 +78,13 @@ The goal of this project is to further increase availability of anatomic segment
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This week we made progress on debugging/fixing/imporoving segmentation workflow and the associated tools.
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1. Refined post-processing component of the workflow - improved/fixed generation of DICOM SEG.
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2. Fixed handling of deflate transfer syntax in dcmqi, which was broken on windows (which was also broken in Slicer) [https://github.com/QIICR/dcmqi/pull/549](https://github.com/QIICR/dcmqi/pull/549)
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3. Adding SNOMED mapping upstream to the MOOSE segmentator [https://github.com/ENHANCE-PET/MOOSE/pull/241](https://github.com/ENHANCE-PET/MOOSE/pull/241)
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4. Started working on making the segmentation workflow applicable to segmentation of non-IDC data (via private Google bucket access)
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5. Added the option to allow Terra to access private Google buckets containing dicom files
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6. Added export of output DICOM SEG files into Google Cloud DICOM stores
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7. Added output CSVs containing performance metrics and structure metrics to the output
3. Fixed handling of deflate transfer syntax in dcmqi, which was broken on windows (which was also broken in Slicer) [https://github.com/QIICR/dcmqi/pull/549](https://github.com/QIICR/dcmqi/pull/549)
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4. Adding SNOMED mapping upstream to the MOOSE segmentator [https://github.com/ENHANCE-PET/MOOSE/pull/241](https://github.com/ENHANCE-PET/MOOSE/pull/241)
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5. Started working on making the segmentation workflow applicable to segmentation of non-IDC data (via private Google bucket access)
85
+
6. Added the option to allow Terra to access private Google buckets containing dicom files
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7. Added export of output DICOM SEG files into Google Cloud DICOM stores
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8. Added output CSVs containing performance metrics and structure metrics to the output
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