Merging over v3 to main (for roll-out of v3 upgrade)#125

Merged

ago109 merged 126 commits intomainfrom

Dec 6, 2025

Commits on Jul 24, 2025

Commits on Aug 8, 2025

Fixed an execution bug
willgebhardt
committed

Commits on Sep 22, 2025

ported over quad-lif to v3 - needs testing
Alexander Ororbia
committed

Commits on Sep 26, 2025

ported over IF/quadLIF cells, minor revision to LIF cell
Alexander Ororbia
committed

Commits on Sep 29, 2025

Start util cleanup
willgebhardt
committed

Commits on Sep 30, 2025

refactored/ported RAFCell to v3
Alexander Ororbia
committed

Commits on Oct 1, 2025

ported over/refactored WTASCell for v3
Alexander Ororbia
committed

Commits on Oct 6, 2025

wrote successful unit-test of WTASCell
Alexander Ororbia
committed

Commits on Oct 8, 2025

put back in init-structure/pointers
Alexander Ororbia
committed
fixed minor error in LIFCell, got unit-test for LIFCell to run
Alexander Ororbia
committed

Commits on Nov 3, 2025

quad-lif test sketched
Alexander Ororbia
committed
sketch of ifcell test
Alexander Ororbia
committed
fixed minor bugs and tests locally pass for if, quad-lif, and lif-cells now, with minor patches to help fun and doc-strings
Alexander Ororbia
committed
refactored raf-cell and test passed
Alexander Ororbia
committed

Commits on Nov 4, 2025

refactored adex/test passed; minor cleanup in lif, raf, and wtas cells
Alexander Ororbia
committed
refactored fn-cell and test passed
Alexander Ororbia
committed
cleaned up lif, raf, wtas, fn, and quad-lif cells repr method
Alexander Ororbia
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Commits on Nov 5, 2025

refactored and tests passed for izh and h-h cells
Alexander Ororbia
committed

Commits on Nov 6, 2025

JaxProcess update
willgebhardt
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Merge branch 'v3' of github.com:NACLab/ngc-learn into v3
willgebhardt
committed
cleaned up dunder repr method, moved to JaxComponent parent; fixed __init__ pointer to tensorstats
Alexander Ororbia
committed
refactored alpha and exp-synapses, tests passed; minor edit to __init__ for synapses
Alexander Ororbia
committed
refactored short-term syn, tests passed - including stp-dense-syn and minor cleanup/edit to synapse __init__
Alexander Ororbia
committed
refactored bcm-syn and test passed
Alexander Ororbia
committed
refactored exp-stdp-syn and passed tests for exp-stdp-syn and trace-stdp-syn
Alexander Ororbia
committed

Commits on Nov 7, 2025

refactored event-stdp-syn and test passed
Alexander Ororbia
committed
refactored mstdpet-syn and test passed
Alexander Ororbia
committed
refactored stdp-conv-syn/conv-syn and test passed
Alexander Ororbia
committed
refactored and passed test for deconv/stdp-deconv-syn and other minor cleanup for conv/deconv support
Alexander Ororbia
committed

Commits on Nov 10, 2025

Commits on Nov 12, 2025

minor edit to lif/modulated-syn init file
Alexander Ororbia
committed
fixed some minor bugs in rate-coded cells/hebb-syn
Alexander Ororbia
committed
update code
rxng8
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minor patches to components, including hebb-syn/conv/deconv and reward-cell
Alexander Ororbia
committed
minor patches to components, including hebb-syn/conv/deconv and reward-cell
Alexander Ororbia
committed

Commits on Nov 15, 2025

made revisions to components/clean-up; added back in deprecators
Alexander Ororbia
committed
removed lava sub-module, and removed monitor/base-monitor legacy components
Alexander Ororbia
committed
minor cleanup of inits
Alexander Ororbia
committed
refactored regression module to be compliant with v3
Alexander Ororbia
committed
adjusted sphinx-docs w.r.t. new v3 refactoring
Alexander Ororbia
committed

Commits on Nov 16, 2025

minor revision to double-exp syn pointing, mods to modeling docs
Alexander Ororbia
committed

Commits on Nov 17, 2025

updated adex tutorial doc to v3
Alexander Ororbia
committed
revised adex and error-cell neurocog tutorials
Alexander Ororbia
committed
fixed minor issues in input-encoders, further revisions to docs for v3
Alexander Ororbia
committed
revised dyn/chem-syn neurocog doc, cleaned up dynamic syn
Alexander Ororbia
committed
revised fn and hh-cell neurocog docs, added some refs to distribution generator
Alexander Ororbia
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revised integration and izh-cell neurocog docs
Alexander Ororbia
committed

Commits on Nov 18, 2025

revised izh-cell, cleaned-up fn-cell, and revised lif neurocog docs
Alexander Ororbia
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revised metrics/plotting neurocog docs
Alexander Ororbia
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revised mod/reward-stdp neurocog doc
Alexander Ororbia
committed

Commits on Nov 19, 2025

revised stp-syn neurocog doc and updated stp-syn to use proper initializer
Alexander Ororbia
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revised elements of utils to comply with docs
Alexander Ororbia
committed

Commits on Nov 20, 2025

revised stdp neurocog doc to v3
Alexander Ororbia
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revised traces neurocog tutorial to v3
Alexander Ororbia
committed
cleaned up utils.optim and wrote compliant NAG optim
Alexander Ororbia
committed
cleaned up utils.optim and wrote compliant NAG optim
Alexander Ororbia
committed
cleanup of components, added leaky-noise-cell, minor edits
Alexander Ororbia
committed
revised leaky-noise-cell, wrote its unit test, test-passed
Alexander Ororbia
committed
some revisions/updates to toc/pointer/general tutorial docs
Alexander Ororbia
committed

Commits on Nov 21, 2025

minor revisions to pyproject/req files
Alexander Ororbia
committed
update reinforce synapse
rxng8
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update test cases
rxng8
committed

Commits on Nov 22, 2025

implemented in-house gmm, in-built to ngclearn; tested on gaussian mode data
Alexander Ororbia
committed
Merge branch 'v3' of github.com:NACLab/ngc-learn into v3
Alexander Ororbia
committed
wrote gmm density estimator tutorial
Alexander Ororbia
committed
patched some tests/syn/neuron components, added sketch of bmm density
Alexander Ororbia
committed
fixed test_laplacianErrorCell and laplace-cell bug
Alexander Ororbia
committed
fixed test_laplacianErrorCell and laplace-cell bug
Alexander Ororbia
committed
made patches to bmm
Alexander Ororbia
committed
updated density tutorial/neurocog doc
Alexander Ororbia
committed
minor edit to gmm/bmm docs
Alexander Ororbia
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minor edit to gmm/bmm docs
Alexander Ororbia
committed

Commits on Nov 23, 2025

cleaned up density structure, use parent mixture class to organize model variations
Alexander Ororbia
committed
cleaned up density structure, use parent mixture class to organize model variations
Alexander Ororbia
committed

Commits on Nov 24, 2025

added basic exp-mixture to utils.density
Alexander Ororbia
committed
minor edits to emm
Alexander Ororbia
committed
cleaned up mixtures and finished debugging EMM/works on example
Alexander Ororbia
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removed old weight_distribution.py, other cleanup/revisions throughout
Alexander Ororbia
committed
minor edit to data-loader
Alexander Ororbia
committed

Commits on Nov 25, 2025

revised tests to no longer use weight_distribution/revisions throughout
Alexander Ororbia
committed
minor edit to emm doc
Alexander Ororbia
committed
added bic calculation to metric_utils
Alexander Ororbia
committed

Commits on Nov 29, 2025

fix ratecell ug of passing unrelated kwargs to parent class
rxng8
committed
added calc_update() co-routine to hebbian-syn component
Alexander Ororbia
committed

Commits on Nov 30, 2025

fix weight init
rxng8
committed

Commits on Dec 3, 2025

integrated rbm/harmonium model-exhibit
Alexander Ororbia
committed
Update __init__.py
willgebhardt
committed
Merge branch 'v3' of github.com:NACLab/ngc-learn into v3
willgebhardt
committed
placed pointer to rao-ballard1999 exhibit; updates to docs
Alexander Ororbia
committed
updates to docs/revisions
Alexander Ororbia
committed
removed flag from bernoulli/latency-cells for now; minor edit to doc
Alexander Ororbia
committed
updates to theory doc
Alexander Ororbia
committed
updated history log
Alexander Ororbia
committed
minor clean-up of ngclearn.utils.viz.dim_reduce
Alexander Ororbia
committed

Commits on Dec 4, 2025

Commits on Dec 5, 2025

minor revisions/polish
Alexander Ororbia
committed
modded docs to include v3 foundations
Alexander Ororbia
committed
updates to init for logging
willgebhardt
committed
Updates to lessons
willgebhardt
committed
final cleanup/polish/update to docs for v3 nudge
Alexander Ororbia
committed
updates to museum doc for v3
Alexander Ororbia
committed

Commits on Dec 6, 2025

nudged citation file
Alexander Ororbia
committed
minor nudge to docs/files to point to v3
Alexander Ororbia
committed
Merge branch 'main' into v3
ago109
authored