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Merged
ago109 merged 11 commits into from
Jun 9, 2026
Merged

Release merge back in some small alignment mods/revisions back to main #156

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ee7a8a3
Final nudge to v3.1.0 (#149)
ago109 May 1, 2026
7e5532b
minor edit to history
May 1, 2026
68bdd5c
fixed to header/requirements
May 1, 2026
d71beb7
fixed to header/requirements
May 1, 2026
496cf1f
fixed to header/requirements
May 1, 2026
81dcb6e
cleanup of ganglion cell
May 1, 2026
2a54202
cleanup of metric util
May 1, 2026
a4ef0c4
Merge branch 'main' into release
ago109 May 1, 2026
86f09e0
Merge pull request #155 from NACLab/main
ago109 Jun 9, 2026
4220620
update to history log
Jun 9, 2026
6aeb69a
aligned doc source to v3.1.1
Jun 9, 2026
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24 changes: 24 additions & 0 deletions docs/source/ngclearn.components.input_encoders.rst
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Expand Up @@ -20,6 +20,14 @@ ngclearn.components.input\_encoders.ganglionCell module
:undoc-members:
:show-inheritance:

ngclearn.components.input\_encoders.gridCell module
---------------------------------------------------

.. automodule:: ngclearn.components.input_encoders.gridCell
:members:
:undoc-members:
:show-inheritance:

ngclearn.components.input\_encoders.latencyCell module
------------------------------------------------------

Expand All @@ -36,6 +44,14 @@ ngclearn.components.input\_encoders.phasorCell module
:undoc-members:
:show-inheritance:

ngclearn.components.input\_encoders.placeCell module
----------------------------------------------------

.. automodule:: ngclearn.components.input_encoders.placeCell
:members:
:undoc-members:
:show-inheritance:

ngclearn.components.input\_encoders.poissonCell module
------------------------------------------------------

Expand All @@ -44,6 +60,14 @@ ngclearn.components.input\_encoders.poissonCell module
:undoc-members:
:show-inheritance:

ngclearn.components.input\_encoders.populationCoderCell module
--------------------------------------------------------------

.. automodule:: ngclearn.components.input_encoders.populationCoderCell
:members:
:undoc-members:
:show-inheritance:

Module contents
---------------

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8 changes: 8 additions & 0 deletions docs/source/ngclearn.components.synapses.hebbian.rst
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Expand Up @@ -36,6 +36,14 @@ ngclearn.components.synapses.hebbian.expSTDPSynapse module
:undoc-members:
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ngclearn.components.synapses.hebbian.gerstnerHebbianSynapse module
------------------------------------------------------------------

.. automodule:: ngclearn.components.synapses.hebbian.gerstnerHebbianSynapse
:members:
:undoc-members:
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ngclearn.components.synapses.hebbian.hebbianSynapse module
----------------------------------------------------------

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16 changes: 16 additions & 0 deletions docs/source/ngclearn.utils.analysis.rst
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Expand Up @@ -12,6 +12,22 @@ ngclearn.utils.analysis.attentive\_probe module
:undoc-members:
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ngclearn.utils.analysis.effective\_dim module
---------------------------------------------

.. automodule:: ngclearn.utils.analysis.effective_dim
:members:
:undoc-members:
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ngclearn.utils.analysis.kmeans\_probe module
--------------------------------------------

.. automodule:: ngclearn.utils.analysis.kmeans_probe
:members:
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ngclearn.utils.analysis.knn\_probe module
-----------------------------------------

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29 changes: 29 additions & 0 deletions docs/source/ngclearn.utils.filters.rst
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@@ -0,0 +1,29 @@
ngclearn.utils.filters package
==============================

Submodules
----------

ngclearn.utils.filters.cortical\_gauss\_filter module
-----------------------------------------------------

.. automodule:: ngclearn.utils.filters.cortical_gauss_filter
:members:
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ngclearn.utils.filters.gauss\_filter module
-------------------------------------------

.. automodule:: ngclearn.utils.filters.gauss_filter
:members:
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Module contents
---------------

.. automodule:: ngclearn.utils.filters
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1 change: 1 addition & 0 deletions docs/source/ngclearn.utils.rst
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Expand Up @@ -11,6 +11,7 @@ Subpackages
ngclearn.utils.density
ngclearn.utils.diffeq
ngclearn.utils.feature_dictionaries
ngclearn.utils.filters
ngclearn.utils.masks
ngclearn.utils.optim
ngclearn.utils.viz
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8 changes: 8 additions & 0 deletions docs/source/ngclearn.utils.viz.rst
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Expand Up @@ -4,6 +4,14 @@ ngclearn.utils.viz package
Submodules
----------

ngclearn.utils.viz.classification\_analysis module
--------------------------------------------------

.. automodule:: ngclearn.utils.viz.classification_analysis
:members:
:undoc-members:
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ngclearn.utils.viz.compartment\_plot module
-------------------------------------------

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8 changes: 8 additions & 0 deletions history.txt
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Expand Up @@ -101,4 +101,12 @@ History
* some additional clean-up, including supported retinal ganglion encoder
* fixed pkg-resource header (in both ngcsimlib and ngclearn) to account for newer python(s)

3.1.1
— — — — — — — — -
* Several patches and fixes (ensured certain error-neurons behaved as in v3.0.0)
* Update to docs/revisions
* Integration of filters/filtering functionality (including simple divisive normalization) in utilities
* Integration of several useful metrics (including for characterizing sparsity)
* Some additional clean-up throughout


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