Migrate 10-day memory variables out of the main phenology sub-routine#1389

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mpaiao wants to merge 56 commits into

mpaiao:mpaiao-pr-10davgs

Commits on Apr 10, 2025

First step towards separating the calculation of averaged/cumulative values used by
mpaiao
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Update the code for obtaining the average temperature, so it is in line with more recent
mpaiao
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Commits on Apr 11, 2025

Commits on Apr 14, 2025

Fix missing calls to moisture memory update, and added documentation to the existing module.
mpaiao
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Merge branch 'main' into mpaiao-pr-10davgs
mpaiao
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Commits on Apr 17, 2025

Remove variables that are no longer used in sub-routine phenology.
mpaiao
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Commits on Apr 18, 2025

Remove unused parameter from FatesCumulativeMemoryMod.F90
mpaiao
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Commits on May 11, 2025

Refactor: Per-age outputs, in existing subroutines.

samsrabin
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mpaiao
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Refactor: Age-class vars to update_history_hifrq2_ageclass().

samsrabin
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mpaiao
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Refactor: Age-class vars to update_history_dyn2_ageclass().

samsrabin
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mpaiao
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Bugfix: Add logging mortality to _SZAP outputs.

samsrabin
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mpaiao
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Add non-per-ageclass versions of some history vars.

samsrabin
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mpaiao
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Change 7 hist vars to not be normalized to age-class area.

samsrabin
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mpaiao
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Bugfix: Update FATES_VEGC_APPF even if cohort is new.

samsrabin
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mpaiao
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Bugfix: Add termination mortality to _SZAP outputs.

samsrabin
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mpaiao
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Add postprocessing info to per-ageclass outputs.

samsrabin
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mpaiao
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Cleanup: update_history_dyn2_ageclass().

samsrabin
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mpaiao
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Cleanup: update_history_hifrq2_ageclass().

samsrabin
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mpaiao
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Move more calculations to update_history_dyn2_ageclass().

samsrabin
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mpaiao
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Cleanup: FatesHistoryInterfaceMod.

samsrabin
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Move FATES_NCL from update_history_dyn2_ageclass() to update_history_dyn1().

samsrabin
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Add units info to SumMortForHistory().

samsrabin
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update_history subroutine names/descriptions now more descriptive.

samsrabin
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update_history_dyn_subsite_ageclass(): Resolve a TODO.

samsrabin
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mpaiao
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Delete unused canopy_area_by_age.

samsrabin
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mpaiao
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Rename _area_ vars in FatesHistoryInterfaceMod to _fracarea_.

samsrabin
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mpaiao
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Fix some indentation.

samsrabin
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mpaiao
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Resolve TODO about fire variable weighting.

samsrabin
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mpaiao
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Remove unneeded cohort class index updates.

samsrabin
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mpaiao
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Add prt_vartypes subroutine GetBiomass().

samsrabin
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mpaiao
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Add comment about reproductive mass being 0.

samsrabin
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mpaiao
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Combine 2 nearby numpft loops.

authored and
mpaiao
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Merge fix: Don't update hio_npp_si_age if cohort is new.

samsrabin
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mpaiao
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Add FATES_PRIMARY_AREA history field.

samsrabin
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mpaiao
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Rename FATES_SECONDARY_ANTHRODISTAGE_AP to FATES_SECONDARY_ANTHRODIST_AP.

samsrabin
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mpaiao
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Fix/standardize FATES_SECONDARY_AREA_ANTHRO* names.

samsrabin
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mpaiao
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Delete an unneeded get_age_class_index() call.

samsrabin
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mpaiao
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Delete an outdated comment about fire variables.

samsrabin
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Move 2 non-age vars out of update_history_dyn_subsite_ageclass().

samsrabin
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mpaiao
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Rename *_fuel_amount_age_fuel vars to have _agfc suffix.

samsrabin
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mpaiao
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Clean up calls of get_age_class_index().

samsrabin
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mpaiao
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Rename some loops to satisfy nag compiler.

samsrabin
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mpaiao
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making dlower_vai(1) = zero, using a dedicated function for veg layer counts, and updating everything else that dependons on that.

rgknox
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mpaiao
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declaration fixes for canopy layer fixes

rgknox
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mpaiao
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changed vai_dlower index on call for consistency

rgknox
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mpaiao
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added more comments to the dlower_vai array descriptor

rgknox
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mpaiao
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altenative bin counting method

rgknox
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mpaiao
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fix to trivial radiation transmission

rgknox
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mpaiao
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make consistent with ctsm

mvdebolskiy
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mpaiao
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updated descriptive text on trivial albedo defs

rgknox
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changed to count method of calculating number of veg layers, its simpler than the maxloc method

rgknox
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mpaiao
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Simplified leaf sun-shade fraction for two-stream

rgknox
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removed unused variables in two-stream absorption call

rgknox
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mpaiao
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Commits on Jul 3, 2025

Merge branch 'api40' into mpaiao-pr-10davgs
mpaiao
committed