feat(app-panel): improve parameter UI (#3)

* Update count_type to list with raw, clean, filt options (default: filt)

* Update count_type to list with raw, clean, filt, norm options (default: norm)

* Move count_type to first position in Basic category, remove extra category

* Split visualization parameters by plot type

* Move Advanced category to end

* Update changelog for parameter UI changes

* Add author handle to changelog entry

Author: phoman14

.codeocean/app-panel.json

@@ -17,6 +17,12 @@
 			"name": "Basic",
 			"icon": "📂"
 		},
+		{
+			"id": "VisGeneral",
+			"name": "Visualization: General",
+			"description": "General visualization and plotting options",
+			"icon": "\ud83d\udcca"
+		},
 		{
 			"id": "XqgPq28Eo5VCFSZu",
 			"name": "Advanced",
@@ -25,6 +31,22 @@
 		}
 	],
 	"parameters": [
+		{
+			"id": "UA4GuIpVAxdcmHAG",
+			"category": "gn9FXwemlVazWQIo",
+			"name": "Count type",
+			"param_name": "count_type",
+			"description": "Type of counts to batch correct. Must be a count type in names(moo@counts)",
+			"type": "list",
+			"value_type": "string",
+			"default_value": "norm",
+			"extra_data": [
+				"raw",
+				"clean",
+				"filt",
+				"norm"
+			]
+		},
 		{
 			"id": "vB4qNnRxLt9oAy2d",
 			"category": "gn9FXwemlVazWQIo",
@@ -46,16 +68,6 @@
 			"value_type": "string",
 			"default_value": "Group"
 		},
-		{
-			"id": "UA4GuIpVAxdcmHAG",
-			"category": "XqgPq28Eo5VCFSZu",
-			"name": "Count type",
-			"param_name": "count_type",
-			"description": "Type of counts to batch correct. Must be a count type in names(moo@counts)",
-			"type": "text",
-			"value_type": "string",
-			"default_value": "norm"
-		},
 		{
 			"id": "vA3pMmQwKs8nZx1c",
 			"category": "XqgPq28Eo5VCFSZu",
@@ -88,7 +100,7 @@
 		},
 		{
 			"id": "vG9vSsWcQy4tFz7i",
-			"category": "XqgPq28Eo5VCFSZu",
+			"category": "VisGeneral",
 			"name": "Label column name",
 			"param_name": "label_colname",
 			"description": "Column from sample metadata containing labels for plots",
@@ -108,7 +120,7 @@
 		},
 		{
 			"id": "vJ2yVvZfTb7wIc0l",
-			"category": "XqgPq28Eo5VCFSZu",
+			"category": "VisGeneral",
 			"name": "Colors for plots",
 			"param_name": "colors_for_plots",
 			"description": "Comma-separated list of colors for PCA and histogram",

CHANGELOG.md

@@ -1,5 +1,9 @@
 # Code Ocean capsule - MOSuite - batch correct counts
 
+## Development version
+
+- Improved the Code Ocean parameter UI for the batch correct counts capsule (#3, @phoman14).
+
 ## v4.0
 
 - The MOSuite package is now available in `code/MOSuite`. (#2)
@@ -20,4 +24,4 @@ Use MOSuite v0.2.1-dev docker image
 
 Initial release
 
-<https://poc-nci.codeocean.io/capsule/1373453/tree/v1> `dd55143`
+<https://poc-nci.codeocean.io/capsule/1373453/tree/v1> `dd55143`