Skip to content

add codonfm 5b arch params#1476

Merged
balvisio merged 1 commit into
mainfrom
dev/ba/BIO-233-validate-condonfm-5b-recipe
May 20, 2026
Merged

add codonfm 5b arch params#1476
balvisio merged 1 commit into
mainfrom
dev/ba/BIO-233-validate-condonfm-5b-recipe

Conversation

@balvisio
Copy link
Copy Markdown
Collaborator

Description

This PR adds support for the EncodonFM 5B model.

Type of changes

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Refactor
  • Documentation update
  • Other (please describe):

CI Pipeline Configuration

Configure CI behavior by applying the relevant labels. By default, only basic unit tests are run.

  • ciflow:skip - Skip all CI tests for this PR
  • ciflow:notebooks - Run Jupyter notebooks execution tests for bionemo2
  • ciflow:slow - Run slow single GPU integration tests marked as @pytest.mark.slow for bionemo2
  • ciflow:all - Run all tests (unit tests, slow tests, and notebooks) for bionemo2. This label can be used to enforce running tests for all bionemo2.
  • ciflow:all-recipes - Run tests for all recipes (under bionemo-recipes). This label can be used to enforce running tests for all recipes.

Unit tests marked as @pytest.mark.multi_gpu or @pytest.mark.distributed are not run in the PR pipeline.

For more details, see CONTRIBUTING

Note

By default, only basic unit tests are run. Add appropriate labels to enable an additional test coverage.

Authorizing CI Runs

We use copy-pr-bot to manage authorization of CI
runs on NVIDIA's compute resources.

  • If a pull request is opened by a trusted user and contains only trusted changes, the pull request's code will
    automatically be copied to a pull-request/ prefixed branch in the source repository (e.g. pull-request/123)
  • If a pull request is opened by an untrusted user or contains untrusted changes, an NVIDIA org member must leave an
    /ok to test comment on the pull request to trigger CI. This will need to be done for each new commit.

Triggering Code Rabbit AI Review

To trigger a code review from code rabbit, comment on a pull request with one of these commands:

See https://docs.coderabbit.ai/reference/review-commands for a full list of commands.

Pre-submit Checklist

  • I have tested these changes locally
  • I have updated the documentation accordingly
  • I have added/updated tests as needed
  • All existing tests pass successfully

@coderabbitai
Copy link
Copy Markdown
Contributor

coderabbitai Bot commented Feb 19, 2026

Important

Review skipped

Auto reviews are disabled on this repository. Please check the settings in the CodeRabbit UI or the .coderabbit.yaml file in this repository. To trigger a single review, invoke the @coderabbitai review command.

⚙️ Run configuration

Configuration used: Path: .coderabbit.yaml

Review profile: CHILL

Plan: Enterprise

Run ID: 49d57ee3-6c6e-4120-882b-06742f056a04

You can disable this status message by setting the reviews.review_status to false in the CodeRabbit configuration file.

Use the checkbox below for a quick retry:

  • 🔍 Trigger review
✨ Finishing Touches
🧪 Generate unit tests (beta)
  • Create PR with unit tests
  • Commit unit tests in branch dev/ba/BIO-233-validate-condonfm-5b-recipe

Comment @coderabbitai help to get the list of available commands and usage tips.

Copy link
Copy Markdown
Collaborator

@trvachov trvachov left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

approved, pending 1 comment.

@balvisio balvisio force-pushed the dev/ba/BIO-233-validate-condonfm-5b-recipe branch 2 times, most recently from 071ed00 to cb73727 Compare February 20, 2026 02:24
@balvisio balvisio force-pushed the dev/ba/BIO-233-validate-condonfm-5b-recipe branch 5 times, most recently from 71cee07 to 6ba472f Compare February 25, 2026 03:27
@copy-pr-bot
Copy link
Copy Markdown

copy-pr-bot Bot commented Feb 25, 2026

This pull request requires additional validation before any workflows can run on NVIDIA's runners.

Pull request vetters can view their responsibilities here.

Contributors can view more details about this message here.

@balvisio balvisio force-pushed the dev/ba/BIO-233-validate-condonfm-5b-recipe branch from 30ec250 to 6ed39b7 Compare February 27, 2026 03:56
@balvisio balvisio force-pushed the dev/ba/BIO-233-validate-condonfm-5b-recipe branch 3 times, most recently from dc29deb to a8bd5b5 Compare March 16, 2026 03:11
@balvisio balvisio force-pushed the dev/ba/BIO-233-validate-condonfm-5b-recipe branch 2 times, most recently from d5be5bf to f15ed9b Compare May 19, 2026 23:46
@balvisio balvisio enabled auto-merge May 19, 2026 23:48
@balvisio balvisio force-pushed the dev/ba/BIO-233-validate-condonfm-5b-recipe branch 4 times, most recently from eba4b8b to 92b10d4 Compare May 20, 2026 03:03
@balvisio
Copy link
Copy Markdown
Collaborator Author

/ok to test 92b10d4

Signed-off-by: Bruno Alvisio <balvisio@nvidia.com>
@balvisio balvisio force-pushed the dev/ba/BIO-233-validate-condonfm-5b-recipe branch from 92b10d4 to b2afadf Compare May 20, 2026 04:21
@balvisio
Copy link
Copy Markdown
Collaborator Author

/ok to test b2afadf

@balvisio balvisio added this pull request to the merge queue May 20, 2026
Merged via the queue into main with commit b0953dc May 20, 2026
23 checks passed
@balvisio balvisio deleted the dev/ba/BIO-233-validate-condonfm-5b-recipe branch May 20, 2026 04:47
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants