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docs/hpc/09_ood/06_Alphafold2.mdx

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@@ -6,7 +6,7 @@ The AlphaFold2 software predicts protein structure from an amino acid sequence.
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You can run AlphaFold2 in OOD by going to the URL [ood.hpc.nyu.edu](http://ood.hpc.nyu.edu) in your browser and selecting `AlphaFold2` from the `Interactive Apps` pull-down menu at the top of the page. As you can see below, once you've used it and other interactive apps they'll show up on your home screen under the `Recently Used Apps` header.
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:::note
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Be aware that when you start from `Recently Used Apps` it will start with the same configuration that you used previously. If you'd like to configure your AlphFold2 session differently, you'll need to select it from the menu.
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Be aware that when you start from `Recently Used Apps` it will start with the same configuration that you used previously. If you'd like to configure your AlphaFold2 session differently, you'll need to select it from the menu.
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![OOD Interactive Apps menu](./static/ood_interactive_apps_alphafold2.png)
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You can select the version of AlphaFold2 to use, the number or cores, amount of memory, GPU type (if any), amount of time, and optional Slurm options. You'll also be able to select either `/home` or `/scratch` to use as your root directory.
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![OOD AlphFold2 Configuration](./static/ood_alphafold2_config.png)
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![OOD AlphaFold2 Configuration](./static/ood_alphafold2_config.png)
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:::warning
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If you select to use `/home` as your root directory be careful not to go over your quota. You can find your current usage with the `myquota` command. Please see our [Storage documentation](../03_storage/01_intro_and_data_management.mdx) for details about your storage options.

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