Search results

No IDs of large peptides (Charge > 7+)

Status: Open.

#2775 In Nesvilab/FragPipe;

· Webb-Lab opened on May 6, 2026

Extend TMT support for MBR

Status: Open.

#2773 In Nesvilab/FragPipe;

· seanh-funcphos opened on May 6, 2026

Peak boundaries in Skyline

Status: Open.

#2772 In Nesvilab/FragPipe;

· jd690764 opened on May 5, 2026

SILAC-digly: heavy peptide not paired when lysine is both heavy and modified

Status: Open.

#2769 In Nesvilab/FragPipe;

· GabPescador opened on Apr 30, 2026

Add ProForma 2.1 Peptidoforms to FragPipe output

Status: Open.

#2733 In Nesvilab/FragPipe;

· mobiusklein opened on Apr 6, 2026

PTMprophet error

Status: Open.

#2717 In Nesvilab/FragPipe;

· jd690764 opened on Mar 27, 2026

PTM Assignment in Combined Peptide Results

Status: Open.

#2584 In Nesvilab/FragPipe;

· KZ-MS opened on Dec 8, 2025

Metadata-aware MBR

Status: Open.

#2564 In Nesvilab/FragPipe;

· leonardblaschek opened on Nov 25, 2025

example output data

Status: Open.

#2551 In Nesvilab/FragPipe;

· mffrank opened on Nov 20, 2025

Metaproteomics module test execution problem

Status: Open.

#2541 In Nesvilab/FragPipe;

· MiguelCos opened on Nov 13, 2025

O-Pair

Status: Open.

#2522 In Nesvilab/FragPipe;

· peteythecat1 opened on Oct 29, 2025

A Sectioning and Database Enrichment Approach using FragPipe

Metaproteomics

Status: Open.

#2254 In Nesvilab/FragPipe;

· BPGA opened on Jun 6, 2025