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1 | 1 | <?xml version="1.0" encoding="utf-8"?> |
2 | | -<model version="NetLogo 7.0.0-beta0" snapToGrid="false"> |
| 2 | +<model version="NetLogo 7.0.0-beta1" snapToGrid="true"> |
3 | 3 | <code><![CDATA[extensions[palette] |
4 | 4 |
|
5 | 5 | breed [nuclei nucleus] |
@@ -571,45 +571,45 @@ end |
571 | 571 | ; Copyright 2021 Uri Wilensky. |
572 | 572 | ; See Info tab for full copyright and license.]]></code> |
573 | 573 | <widgets> |
574 | | - <view x="210" wrappingAllowedX="true" y="10" frameRate="30.0" minPycor="-100" height="607" showTickCounter="true" patchSize="3.0" fontSize="10" wrappingAllowedY="true" width="607" tickCounterLabel="ticks" maxPycor="100" updateMode="1" maxPxcor="100" minPxcor="-100"></view> |
575 | | - <slider x="33" step="1" y="80" max="30000" display="max-fluid-particles" height="33" min="0" direction="Horizontal" default="10000.0" variable="max-fluid-particles" width="172" sizeVersion="0"></slider> |
576 | | - <button x="840" y="67" height="33" disableUntilTicks="false" forever="false" kind="Observer" width="63" sizeVersion="0">setup |
577 | | -</button> |
578 | | - <button x="904" y="67" height="33" disableUntilTicks="true" forever="true" kind="Observer" width="63" sizeVersion="0">go</button> |
579 | | - <slider x="33" step="1" y="113" max="99" display="total-fluid-volume" height="33" min="0" direction="Horizontal" default="50.0" variable="total-fluid-volume" units="%" width="172" sizeVersion="0"></slider> |
580 | | - <slider x="33" step="0.01" y="146" max="1" display="diffusion-proportion" height="33" min="0" direction="Horizontal" default="0.5" variable="diffusion-proportion" width="172" sizeVersion="0"></slider> |
581 | | - <slider x="933" step="1" y="151" max="5" display="brush-size" height="33" min="0" direction="Horizontal" default="5.0" variable="brush-size" width="92" sizeVersion="0"></slider> |
582 | | - <switch x="933" y="185" height="33" on="false" variable="eraser" display="eraser" width="92" sizeVersion="0"></switch> |
583 | | - <slider x="33" step="0.1" y="209" max="100" display="food-signal-boost" height="33" min="0" direction="Horizontal" default="20.0" variable="food-signal-boost" units="%" width="172" sizeVersion="0"></slider> |
584 | | - <button x="840" y="407" height="33" disableUntilTicks="false" forever="false" kind="Observer" display="Remove-Slime-Mold" width="183" sizeVersion="0">clear-turtles</button> |
585 | | - <button x="840" y="441" height="33" disableUntilTicks="false" forever="false" kind="Observer" display="Remove Cytoplasmic Fluid" width="183" sizeVersion="0">ask turtles with [breed = cytoplasm] [die]</button> |
586 | | - <monitor x="840" precision="17" y="475" height="45" fontSize="11" display="Cytoplasmic Fluid Particles" width="183" sizeVersion="0">count turtles with [breed = cytoplasm]</monitor> |
587 | | - <slider x="33" step="0.01" y="243" max="1" display="eat-proportion" height="33" min="0.00" direction="Horizontal" default="0.0" variable="eat-proportion" width="172" sizeVersion="0"></slider> |
588 | | - <monitor x="840" precision="17" y="521" height="45" fontSize="11" display="Food Particles in the Network" width="183" sizeVersion="0"><![CDATA[count cytoplasm with [carrying-signal > 0]]]></monitor> |
589 | | - <slider x="33" step="1" y="337" max="25" display="fluid-turbulence" height="33" min="0" direction="Horizontal" default="10.0" variable="fluid-turbulence" width="172" sizeVersion="0"></slider> |
590 | | - <slider x="33" step="0.1" y="370" max="100" display="movement-speed" height="33" min="1" direction="Horizontal" default="100.0" variable="movement-speed" units="%" width="172" sizeVersion="0"></slider> |
591 | | - <switch x="840" y="339" height="33" on="false" variable="visualize-velocity?" display="visualize-velocity?" width="183" sizeVersion="0"></switch> |
592 | | - <chooser x="840" y="185" height="45" variable="draw-choice" current="2" display="draw-choice" width="92" sizeVersion="0"> |
593 | | - <choice type="string" value="Wall"></choice> |
594 | | - <choice type="string" value="Food"></choice> |
595 | | - <choice type="string" value="Nucleus"></choice> |
596 | | - </chooser> |
597 | | - <button x="840" y="151" height="33" disableUntilTicks="true" forever="true" kind="Observer" width="92" sizeVersion="0">draw</button> |
598 | | - <slider x="33" step="1" y="277" max="100" display="signal-lifetime" height="33" min="1" direction="Horizontal" default="50.0" variable="signal-lifetime" width="172" sizeVersion="0"></slider> |
599 | | - <note x="36" y="322" height="18" backgroundDark="0" fontSize="12" width="150" markdown="false" textColorLight="-16777216" backgroundLight="0">Fluid Movement</note> |
600 | | - <note x="36" y="194" height="18" backgroundDark="0" fontSize="12" width="150" markdown="false" textColorLight="-16777216" backgroundLight="0">Nutritive Stimuli</note> |
601 | | - <note x="34" y="65" height="18" backgroundDark="0" fontSize="12" width="189" markdown="false" textColorLight="-16777216" backgroundLight="0">Fluid Volume / Tube Strength</note> |
602 | | - <note x="45" y="34" height="34" backgroundDark="0" fontSize="14" width="159" markdown="false" textColorLight="-16777216" backgroundLight="0">MODEL PARAMETERS</note> |
603 | | - <switch x="840" y="373" height="33" on="false" variable="visualize-signaling-molecule?" display="visualize-signaling-molecule?" width="183" sizeVersion="0"></switch> |
604 | | - <chooser x="840" y="102" height="45" variable="setup-choice" current="1" display="setup-choice" width="127" sizeVersion="0"> |
| 574 | + <view x="270" wrappingAllowedX="true" y="10" frameRate="30.0" minPycor="-100" height="607" showTickCounter="true" patchSize="3.0" fontSize="10" wrappingAllowedY="true" width="607" tickCounterLabel="ticks" maxPycor="100" updateMode="1" maxPxcor="100" minPxcor="-100"></view> |
| 575 | + <button x="62" y="535" height="35" disableUntilTicks="false" forever="false" kind="Observer" width="138" display="Reset Parameters">default-parameters</button> |
| 576 | + <slider x="10" step="1" y="342" max="100" width="250" display="signal-lifetime" height="50" min="1" direction="Horizontal" default="50.0" variable="signal-lifetime"></slider> |
| 577 | + <slider x="10" step="0.1" y="469" max="100" width="250" display="movement-speed" height="50" min="1" direction="Horizontal" default="100.0" variable="movement-speed" units="%"></slider> |
| 578 | + <slider x="10" step="1" y="419" max="25" width="250" display="fluid-turbulence" height="50" min="0" direction="Horizontal" default="10.0" variable="fluid-turbulence"></slider> |
| 579 | + <slider x="10" step="0.01" y="291" max="1" width="250" display="eat-proportion" height="50" min="0.00" direction="Horizontal" default="0.0" variable="eat-proportion"></slider> |
| 580 | + <slider x="10" step="0.1" y="240" max="100" width="250" display="food-signal-boost" height="50" min="0" direction="Horizontal" default="20.0" variable="food-signal-boost" units="%"></slider> |
| 581 | + <slider x="10" step="0.01" y="160" max="1" width="250" display="diffusion-proportion" height="50" min="0" direction="Horizontal" default="0.5" variable="diffusion-proportion"></slider> |
| 582 | + <slider x="10" step="1" y="110" max="99" width="250" display="total-fluid-volume" height="50" min="0" direction="Horizontal" default="50.0" variable="total-fluid-volume" units="%"></slider> |
| 583 | + <slider x="10" step="1" y="60" max="30000" width="250" display="max-fluid-particles" height="50" min="0" direction="Horizontal" default="10000.0" variable="max-fluid-particles"></slider> |
| 584 | + <slider x="885" step="1" y="195" max="5" width="250" display="brush-size" height="50" min="0" direction="Horizontal" default="5.0" variable="brush-size"></slider> |
| 585 | + <button x="890" y="433" height="35" disableUntilTicks="false" forever="false" kind="Observer" width="245" display="Remove-Slime-Mold">clear-turtles</button> |
| 586 | + <button x="890" y="469" height="35" disableUntilTicks="false" forever="false" kind="Observer" width="245" display="Remove Cytoplasmic Fluid">ask turtles with [breed = cytoplasm] [die]</button> |
| 587 | + <monitor x="890" precision="17" y="505" height="60" fontSize="11" width="245" display="Cytoplasmic Fluid Particles">count turtles with [breed = cytoplasm]</monitor> |
| 588 | + <monitor x="890" precision="17" y="566" height="60" fontSize="11" width="245" display="Food Particles in the Network"><![CDATA[count cytoplasm with [carrying-signal > 0]]]></monitor> |
| 589 | + <switch x="890" y="357" height="37" on="false" variable="visualize-velocity?" width="245" display="visualize-velocity?"></switch> |
| 590 | + <switch x="890" y="395" height="37" on="false" variable="visualize-signaling-molecule?" width="245" display="visualize-signaling-molecule?"></switch> |
| 591 | + <chooser x="885" y="82" height="60" variable="setup-choice" current="1" width="250" display="setup-choice"> |
605 | 592 | <choice type="string" value="single-nucleus"></choice> |
606 | 593 | <choice type="string" value="multi-nucleate"></choice> |
607 | 594 | <choice type="string" value="shortest-path"></choice> |
608 | 595 | <choice type="string" value="clear"></choice> |
609 | 596 | </chooser> |
610 | | - <button x="50" y="419" height="33" disableUntilTicks="false" forever="false" kind="Observer" display="Reset Parameters" width="138" sizeVersion="0">default-parameters</button> |
611 | | - <note x="846" y="33" height="34" backgroundDark="0" fontSize="14" width="186" markdown="false" textColorLight="-16777216" backgroundLight="0">ENVIRONMENT CONTROL</note> |
612 | | - <note x="854" y="307" height="18" backgroundDark="0" fontSize="14" width="195" markdown="false" textColorLight="-16777216" backgroundLight="0">VISUALIZATION TOOLS</note> |
| 597 | + <button x="885" y="45" height="35" disableUntilTicks="false" forever="false" kind="Observer" width="120">setup |
| 598 | +</button> |
| 599 | + <button x="1015" y="45" height="35" disableUntilTicks="true" forever="true" kind="Observer" width="120">go</button> |
| 600 | + <chooser x="885" y="248" height="60" variable="draw-choice" current="2" width="250" display="draw-choice"> |
| 601 | + <choice type="string" value="Wall"></choice> |
| 602 | + <choice type="string" value="Food"></choice> |
| 603 | + <choice type="string" value="Nucleus"></choice> |
| 604 | + </chooser> |
| 605 | + <note x="57" y="10" backgroundDark="0" fontSize="14" width="155" markdown="false" height="34" textColorDark="-1" textColorLight="-16777216" backgroundLight="0">MODEL PARAMETERS</note> |
| 606 | + <note x="930" y="325" backgroundDark="0" fontSize="14" width="160" markdown="false" height="18" textColorDark="-1" textColorLight="-16777216" backgroundLight="0">VISUALIZATION TOOLS</note> |
| 607 | + <note x="917" y="10" backgroundDark="0" fontSize="14" width="186" markdown="false" height="34" textColorDark="-1" textColorLight="-16777216" backgroundLight="0">ENVIRONMENT CONTROL</note> |
| 608 | + <note x="5" y="40" backgroundDark="0" fontSize="12" width="189" markdown="false" height="18" textColorDark="-1" textColorLight="-16777216" backgroundLight="0">Fluid Volume / Tube Strength</note> |
| 609 | + <note x="5" y="220" backgroundDark="0" fontSize="12" width="150" markdown="false" height="18" textColorDark="-1" textColorLight="-16777216" backgroundLight="0">Nutritive Stimuli</note> |
| 610 | + <note x="5" y="400" backgroundDark="0" fontSize="12" width="150" markdown="false" height="18" textColorDark="-1" textColorLight="-16777216" backgroundLight="0">Fluid Movement</note> |
| 611 | + <switch x="1015" y="155" height="37" on="false" variable="eraser" width="120" display="eraser"></switch> |
| 612 | + <button x="885" y="155" height="35" disableUntilTicks="true" forever="true" kind="Observer" width="120">draw</button> |
613 | 613 | </widgets> |
614 | 614 | <info><![CDATA[## WHAT IS IT? |
615 | 615 |
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