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[port] add additional missing IO and utility functions, fix meshremap bug
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‎README.md‎

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@@ -205,17 +205,17 @@ tracked in https://github.com/NeuroJSON/pyiso2mesh/issues/1
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| ✅ `s2v.m` | ✅ tested | | ✅ `savebinstl.m` | ⭕️ tested |
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| ✅ `m2v.m` | ✅ tested | | ✅ `saveinr.m` | ⭕️ tested |
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| ✅ `sms.m` | ✅ tested | | ✅ `saveoff.m` | ✅ tested |
208-
| > Streamlined mesh generation| | | ⭕️ `savesmf.m` | ⭕️ tested |
208+
| > Streamlined mesh generation| | | ✅ `savesmf.m` | ⭕️ tested |
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| ✅ `vol2mesh.m` | ✅ tested | | ✅ `savesurfpoly.m` | ✅ tested |
210-
| ✅ `vol2surf.m` | ✅ tested | | ⭕️ `savegts.m` | ⭕️ tested |
211-
| ✅ `surf2mesh.m` | ✅ tested | | ⭕️ `readgts.m` | ⭕️ tested |
212-
| ✅ `surf2vol.m` | ✅ tested | | ⭕️ `savemsh.m` | ⭕️ tested |
213-
| ✅ `mesh2vol.m` | ✅ tested | | ⭕️ `savevrml.m` | ⭕️ tested |
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| ✅ `vol2surf.m` | ✅ tested | | ✅ `savegts.m` | ⭕️ tested |
211+
| ✅ `surf2mesh.m` | ✅ tested | | ✅ `readgts.m` | ⭕️ tested |
212+
| ✅ `surf2vol.m` | ✅ tested | | ✅ `savemsh.m` | ⭕️ tested |
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| ✅ `mesh2vol.m` | ✅ tested | | ✅ `savevrml.m` | ⭕️ tested |
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| > Iso2mesh main function backend| | | ✅ `readasc.m` | ⭕️ tested |
215-
| ✅ `binsurface.m` | ✅ tested | | ⭕️ `readinr.m` | ⭕️ tested |
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| ✅ `binsurface.m` | ✅ tested | | ✅ `readinr.m` | ⭕️ tested |
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| ✅ `cgalv2m.m` | ✅ tested | | ✅ `readmedit.m` | ⭕️ tested |
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| ✅ `cgals2m.m` | ✅ tested | | ✅ `readoff.m` | ✅ tested |
218-
| ✅ `vol2restrictedtri.m` | ✅ tested | | ⭕️ `readsmf.m` | ⭕️ tested |
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| ✅ `vol2restrictedtri.m` | ✅ tested | | ✅ `readsmf.m` | ⭕️ tested |
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| ✅ `surf2volz.m` | ✅ tested | | ✅ `readtetgen.m` | ✅ tested |
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| ✅ `mesh2mask.m` | ✅ tested | | ✅ `deletemeshfile.m` | ✅ tested |
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| > Iso2mesh primitive meshing| | | ✅ `mcpath.m` | ✅ tested |
@@ -229,21 +229,21 @@ tracked in https://github.com/NeuroJSON/pyiso2mesh/issues/1
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| ✅ `latticegrid.m` | ✅ tested | | ✅ `savemsgpack.m` | ⭕️ tested |
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| ✅ `extrudecurve.m` | ⭕️ tested | | ✅ `savebj.m` | ⭕️ tested |
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| ✅ `meshcylinders.m` | ✅ tested | | ✅ `loadbj.m` | ⭕️ tested |
232-
| > Mesh decomposition and query| | | ⭕️ `savemphtxt.m` | ⭕️ tested |
232+
| > Mesh decomposition and query| | | ✅ `savemphtxt.m` | ⭕️ tested |
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| ✅ `finddisconnsurf.m` | ✅ tested | | ✅ `savetetgenele.m` | ⭕️ tested |
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| ✅ `surfedge.m` | ✅ tested | | ✅ `savetetgennode.m` | ⭕️ tested |
235-
| ✅ `volface.m` | ✅ tested | | ⭕️ `saveabaqus.m` | ⭕️ tested |
236-
| ✅ `extractloops.m` | ✅ tested | | ⭕️ `savenirfast.m` | ⭕️ tested |
237-
| ✅ `meshconn.m` | ✅ tested | | ⭕️ `readnirfast.m` | ⭕️ tested |
235+
| ✅ `volface.m` | ✅ tested | | ✅ `saveabaqus.m` | ⭕️ tested |
236+
| ✅ `extractloops.m` | ✅ tested | | ✅ `savenirfast.m` | ⭕️ tested |
237+
| ✅ `meshconn.m` | ✅ tested | | ✅ `readnirfast.m` | ⭕️ tested |
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| ✅ `meshcentroid.m` | ✅ tested | | ✅ `loadnifti.m` | ⭕️ tested |
239-
| ✅ `nodevolume.m` | ✅ tested | | ⭕️ `readmptiff.m` | ⭕️ tested |
239+
| ✅ `nodevolume.m` | ✅ tested | | ✅ `readmptiff.m` | ⭕️ tested |
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| ✅ `elemvolume.m` | ✅ tested | | ✅ `loadjsnirf.m` | ⭕️ tested |
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| ✅ `neighborelem.m` | ✅ tested | | ✅ `savejsnirf.m` | ⭕️ tested |
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| ✅ `layersurf.m` | ⭕️ tested | | ✅ `loadsnirf.m` | ⭕️ tested |
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| ✅ `faceneighbors.m` | ✅ tested | | ✅ `savesnirf.m` | ⭕️ tested |
244-
| ✅ `edgeneighbors.m` | ✅ tested | | ⭕️ `readobjmesh.m` | ⭕️ tested |
245-
| ✅ `maxsurf.m` | ⭕️ tested | | ⭕️ `loadjmesh.m` | ⭕️ tested |
246-
| ✅ `flatsegment.m` | ⭕️ tested | | ⭕️ `savejmesh.m` | ⭕️ tested |
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| ✅ `edgeneighbors.m` | ✅ tested | | ✅ `readobjmesh.m` | ⭕️ tested |
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| ✅ `maxsurf.m` | ⭕️ tested | | ✅ `loadjmesh.m` | ⭕️ tested |
246+
| ✅ `flatsegment.m` | ⭕️ tested | | ✅ `savejmesh.m` | ⭕️ tested |
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| ✅ `orderloopedge.m` | ⭕️ tested | | > Volumetric image pre-processing | |
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| ✅ `mesheuler.m` | ✅ tested | | ✅ `volgrow.m` | ✅ tested |
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| ✅ `bbxflatsegment.m` | ⭕️ tested | | ✅ `volshrink.m` | ✅ tested |
@@ -254,22 +254,22 @@ tracked in https://github.com/NeuroJSON/pyiso2mesh/issues/1
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| ✅ `meshquality.m` | ✅ tested | | ⭕️ `laplacefill.m` | ⭕️ tested |
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| ✅ `meshedge.m` | ✅ tested | | ⭕️ `deislands2d.m` | ⭕️ tested |
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| ✅ `meshface.m` | ✅ tested | | ⭕️ `deislands3d.m` | ⭕️ tested |
257-
| ✅ `surfacenorm.m` | ✅ tested | | ⭕️ `ndgaussian.m` | ⭕️ tested |
258-
| ✅ `nodesurfnorm.m` | ✅ tested | | ⭕️ `ndimfilter.m` | ⭕️ tested |
257+
| ✅ `surfacenorm.m` | ✅ tested | | ✅ `ndgaussian.m` | ⭕️ tested |
258+
| ✅ `nodesurfnorm.m` | ✅ tested | | ✅ `ndimfilter.m` | ⭕️ tested |
259259
| ✅ `uniqedges.m` | ✅ tested | | ⭕️ `imedge3d.m` | ⭕️ tested |
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| ✅ `uniqfaces.m` | ✅ tested | | ⭕️ `internalpoint.m` | ⭕️ tested |
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| ✅ `advancefront.m` | ⭕️ tested | | ⭕️ `smoothbinvol.m` | ⭕️ tested |
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| ✅ `innersurf.m` | ⭕️ tested | | ✅ `thickenbinvol.m` | ✅ tested |
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| ✅ `outersurf.m` | ⭕️ tested | | ✅ `thinbinvol.m` | ✅ tested |
264-
| ✅ `surfvolume.m` | ✅ tested | | ⭕️ `maskdist.m` | ⭕️ tested |
264+
| ✅ `surfvolume.m` | ✅ tested | | ✅ `maskdist.m` | ⭕️ tested |
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| ✅ `insurface.m` | ✅ tested | | > Mesh plotting | |
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| > Mesh processing and reparing| | | ✅ `plotmesh.m` | ✅ tested |
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| ✅ `meshcheckrepair.m` | ✅ tested | | ✅ `plotsurf.m` | ✅ tested |
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| ✅ `meshreorient.m` | ✅ tested | | ✅ `plottetra.m` | ✅ tested |
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| ✅ `removedupelem.m` | ✅ tested | | ✅ `plotedges.m` | ✅ tested |
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| ✅ `removedupnodes.m` | ✅ tested | | ✅ `qmeshcut.m` | ✅ tested |
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| ✅ `removeisolatednode.m` | ✅ tested | | > Miscellaneous functions | |
272-
| ✅ `removeisolatedsurf.m` | ⭕️ tested | | ⭕️ `surfdiffuse.m` | ⭕️ tested |
272+
| ✅ `removeisolatedsurf.m` | ⭕️ tested | | ✅ `surfdiffuse.m` | ⭕️ tested |
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| ✅ `surfaceclean.m` | ⭕️ tested | | ⭕️ `volmap2mesh.m` | ⭕️ tested |
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| ✅ `getintersecttri.m` | ⭕️ tested | | ⭕️ `isoctavemesh.m` | ⭕️ tested |
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| ✅ `delendelem.m` | ⭕️ tested | | ⭕️ `getvarfrom.m` | ⭕️ tested |
@@ -279,14 +279,14 @@ tracked in https://github.com/NeuroJSON/pyiso2mesh/issues/1
279279
| ✅ `dist2surf.m` | ⭕️ tested | | ✅ `getexeext.m` | ✅ tested |
280280
| ✅ `regpt2surf.m` | ⭕️ tested | | ✅ `fallbackexeext.m` | ✅ tested |
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| ✅ `affinemap.m` | ⭕️ tested | | ⭕️ `iso2meshver.m` | ⭕️ tested |
282-
| > Polyline handling| | | ⭕️ `raysurf.m` | ⭕️ tested |
282+
| > Polyline handling| | | ✅ `raysurf.m` | ⭕️ tested |
283283
| ✅ `slicesurf.m` | ⭕️ tested | | ⭕️ `getoptkey.m` | ⭕️ tested |
284284
| ✅ `slicesurf3.m` | ⭕️ tested | | ✅ `rotatevec3d.m` | ⭕️ tested |
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| ✅ `polylinelen.m` | ⭕️ tested | | ✅ `rotmat2vec.m` | ⭕️ tested |
286286
| ✅ `polylinesimplify.m` | ⭕️ tested | | ✅ `varargin2struct.m` | ⭕️ tested |
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| ✅ `polylineinterp.m` | ⭕️ tested | | ✅ `jsonopt.m` | ⭕️ tested |
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| ✅ `closestnode.m` | ⭕️ tested | | ⭕️ `mergestruct.m` | ⭕️ tested |
289-
| > Mesh resampling and optimization| | | ⭕️ `orthdisk.m` | ⭕️ tested |
289+
| > Mesh resampling and optimization| | | ✅ `orthdisk.m` | ⭕️ tested |
290290
| ✅ `meshresample.m` | ✅ tested | | ⭕️ `nestbracket2dim.m` | ⭕️ tested |
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| ✅ `remeshsurf.m` | ✅ tested | | ✅ `memmapstream.m` | ⭕️ tested |
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| ✅ `smoothsurf.m` | ✅ tested | | ✅ `aos2soa.m` | ⭕️ tested |

‎iso2mesh/__init__.py‎

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Original file line numberDiff line numberDiff line change
@@ -136,6 +136,8 @@
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varargin2struct,
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jsonopt,
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nargout,
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orthdisk,
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surfdiffuse,
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)
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from .io import (
@@ -148,6 +150,19 @@
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readtetgen,
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savesurfpoly,
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readoff,
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loadjmesh,
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savejmesh,
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readinr,
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readmptiff,
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readnirfast,
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savenirfast,
159+
readobjmesh,
160+
readsmf,
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saveabaqus,
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savemphtxt,
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savemsh,
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savesmf,
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savevrml,
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)
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153168
from .core import (
@@ -196,6 +211,8 @@
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domeshsimplify,
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slicesurf,
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slicesurf3,
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raysurf,
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raytrace,
199216
)
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201218
from .line import (
@@ -240,6 +257,9 @@
240257
fillholes3d,
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thickenbinvol,
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thinbinvol,
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maskdist,
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ndgaussian,
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ndimfilter,
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)
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__version__ = "0.5.2"
@@ -447,5 +467,25 @@
447467
"slicesurf3",
448468
"bbxflatsegment",
449469
"orderloopedge",
470+
"loadjmesh",
471+
"savejmesh",
472+
"readinr",
473+
"readmptiff",
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"readnirfast",
475+
"savenirfast",
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"readobjmesh",
477+
"readsmf",
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"saveabaqus",
479+
"savemphtxt",
480+
"savemsh",
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"savesmf",
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"savevrml",
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"raysurf",
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"raytrace",
485+
"orthdisk",
486+
"surfdiffuse",
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"maskdist",
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"ndgaussian",
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"ndimfilter",
450490
]
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__license__ = """GNU General Public License v3 and later"""

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