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Commit 6e3440f

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author
Kyle
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Support NeuroConv 0.8.0
- Bump neuroconv to 0.8.0 - Remove neo == 0.14.1 pin (neuroconv >= 0.7.5 compatible) - Remove pandas < 3.0 pin (neuroconv 0.8.0 compatible) - Loosen ndx-pose and nwbinspector pins for pynwb 3 compat
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Lines changed: 4 additions & 12 deletions

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environments/environment-Linux.yml

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@@ -15,9 +15,7 @@ dependencies:
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- flask-cors == 4.0.0
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- flask_restx == 1.1.0
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- werkzeug < 3.0 # werkzeug 3.0 deprecates features used by flask 2.3.2. Remove this when updating flask.
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- neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.7.0
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- pandas < 3.0 # pandas 3.0 returns read-only arrays, breaking spikeinterface Phy extractor
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- neo == 0.14.1 # 0.14.2 is not compatible with neuroconv < 0.7.5
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- neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.8.0
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- scikit-learn == 1.4.0 # Tutorial data generation
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- tqdm_publisher >= 0.0.1 # Progress bars
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- tzlocal >= 5.2 # Frontend timezone handling

environments/environment-MAC-apple-silicon.yml

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@@ -24,9 +24,7 @@ dependencies:
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# NOTE: the NeuroConv wheel on PyPI includes sonpy which is not compatible with arm64, so build and install
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# NeuroConv from GitHub, which will remove the sonpy dependency when building from Mac arm64
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- h5py < 3.13 # 3.13+ uses HDF5 1.14.4 features not in pytables 3.10.2's bundled HDF5 1.14.2
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- neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.7.0
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- pandas < 3.0 # pandas 3.0 returns read-only arrays, breaking spikeinterface Phy extractor
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- neo == 0.14.1 # 0.14.2 is not compatible with neuroconv < 0.7.5
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- neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.8.0
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- scikit-learn == 1.4.0 # Tutorial data generation
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- tqdm_publisher >= 0.0.1 # Progress bars
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- tzlocal >= 5.2 # Frontend timezone handling

environments/environment-MAC-intel.yml

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@@ -18,9 +18,7 @@ dependencies:
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- flask-cors == 4.0.0
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- flask_restx == 1.1.0
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- werkzeug < 3.0 # werkzeug 3.0 deprecates features used by flask 2.3.2. Remove this when updating flask.
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- neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.7.0
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- pandas < 3.0 # pandas 3.0 returns read-only arrays, breaking spikeinterface Phy extractor
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- neo == 0.14.1 # 0.14.2 is not compatible with neuroconv < 0.7.5
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- neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.8.0
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- scikit-learn == 1.4.0 # Tutorial data generation
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- tqdm_publisher >= 0.0.1 # Progress bars
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- tzlocal >= 5.2 # Frontend timezone handling

environments/environment-Windows.yml

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@@ -18,9 +18,7 @@ dependencies:
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- flask-cors === 3.0.10
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- flask_restx == 1.1.0
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- werkzeug < 3.0 # werkzeug 3.0 deprecates features used by flask 2.3.2. Remove this when updating flask.
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- neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.7.0
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- pandas < 3.0 # pandas 3.0 returns read-only arrays, breaking spikeinterface Phy extractor
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- neo == 0.14.1 # 0.14.2 is not compatible with neuroconv < 0.7.5
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- neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.8.0
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- scikit-learn == 1.4.0 # Tutorial data generation
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- tqdm_publisher >= 0.0.1 # Progress bars
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- tzlocal >= 5.2 # Frontend timezone handling

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