Support NeuroConv 0.9.0

Changes from 0.8.0:
- Bump neuroconv to 0.9.0
- Remove dandi < 0.74.0 pin
- Remove DANDI_STAGING_API_KEY
- Use sandbox= parameter for automatic_dandi_upload

Author: Kyle

.github/workflows/testing_dev_e2e_with_live_services.yml

@@ -79,7 +79,6 @@ jobs:
         run: |
           touch .env
           echo DANDI_SANDBOX_API_KEY=${{ secrets.DANDI_SANDBOX_API_KEY }} >> .env
-          echo DANDI_STAGING_API_KEY=${{ secrets.DANDI_SANDBOX_API_KEY }} >> .env
 
       - if: matrix.os != 'ubuntu-latest'
         name: Run tests

environments/environment-Linux.yml

@@ -15,7 +15,7 @@ dependencies:
       - flask-cors == 4.0.0
       - flask_restx == 1.1.0
       - werkzeug < 3.0 # werkzeug 3.0 deprecates features used by flask 2.3.2. Remove this when updating flask.
-      - neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.8.0
+      - neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.9.0
       - scikit-learn == 1.4.0 # Tutorial data generation
       - tqdm_publisher >= 0.0.1 # Progress bars
       - tzlocal >= 5.2 # Frontend timezone handling

environments/environment-MAC-apple-silicon.yml

@@ -23,7 +23,7 @@ dependencies:
       - werkzeug < 3.0 # werkzeug 3.0 deprecates features used by flask 2.3.2. Remove this when updating flask.
       # NOTE: the NeuroConv wheel on PyPI includes sonpy which is not compatible with arm64, so build and install
       # NeuroConv from GitHub, which will remove the sonpy dependency when building from Mac arm64
-      - neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.8.0
+      - neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.9.0
       - scikit-learn == 1.4.0 # Tutorial data generation
       - tqdm_publisher >= 0.0.1 # Progress bars
       - tzlocal >= 5.2 # Frontend timezone handling

environments/environment-MAC-intel.yml

@@ -18,7 +18,7 @@ dependencies:
       - flask-cors == 4.0.0
       - flask_restx == 1.1.0
       - werkzeug < 3.0 # werkzeug 3.0 deprecates features used by flask 2.3.2. Remove this when updating flask.
-      - neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.8.0
+      - neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.9.0
       - scikit-learn == 1.4.0 # Tutorial data generation
       - tqdm_publisher >= 0.0.1 # Progress bars
       - tzlocal >= 5.2 # Frontend timezone handling

environments/environment-Windows.yml

@@ -18,7 +18,7 @@ dependencies:
       - flask-cors === 3.0.10
       - flask_restx == 1.1.0
       - werkzeug < 3.0 # werkzeug 3.0 deprecates features used by flask 2.3.2. Remove this when updating flask.
-      - neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.8.0
+      - neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.9.0
       - scikit-learn == 1.4.0 # Tutorial data generation
       - tqdm_publisher >= 0.0.1 # Progress bars
       - tzlocal >= 5.2 # Frontend timezone handling

src/pyflask/manageNeuroconv/manage_neuroconv.py

@@ -1413,7 +1413,7 @@ def upload_folder_to_dandi(
     return automatic_dandi_upload(
         dandiset_id=dandiset_id,
         nwb_folder_path=Path(nwb_folder_path),
-        staging=sandbox,  # Map sandbox parameter to staging for external API
+        sandbox=sandbox,  # Map sandbox parameter to staging for external API
         cleanup=cleanup,
         number_of_jobs=number_of_jobs or 1,
         number_of_threads=number_of_threads or 1,
@@ -1449,7 +1449,7 @@ def upload_project_to_dandi(
     return automatic_dandi_upload(
         dandiset_id=dandiset_id,
         nwb_folder_path=CONVERSION_SAVE_FOLDER_PATH / project,  # Scope valid DANDI upload paths to GUIDE projects
-        staging=sandbox,  # Map sandbox parameter to staging for external API
+        sandbox=sandbox,  # Map sandbox parameter to staging for external API
         cleanup=cleanup,
         number_of_jobs=number_of_jobs,
         number_of_threads=number_of_threads,