Update RAM to be able to run it on VIP EGI grid

Output in log file
Do not download the test data, use the data available in the package
Use python 3.12 because pymedphys cannot be used with python >= 3.13

Author: tbaudier

opengate/tests/src/advanced_tests/linacs/Dockerfile_opengate_vip

@@ -13,15 +13,14 @@ MAINTAINER Thomas Baudier <thomas.baudier@creatis.insa-lyon.fr>
 RUN     yum install -y wget \
      && /opt/python/cp312-cp312/bin/pip install opengate \
      && export PATH=/opt/python/cp312-cp312/bin:$PATH \
-     && opengate_tests \
+     && opengate_info \
      && cd /opt/python/cp312-cp312/lib/python3.12/site-packages/opengate/tests/src/advanced_tests/linacs/ \
      && wget http://www.creatis.insa-lyon.fr/~baudier/data_advanced_test_linac.zip \
      && unzip data_advanced_test_linac.zip \
      && rm -f data_advanced_test_linac.zip \
      && mkdir output \
-     && pip install "pymedphys[tests]==0.41.0"
+     && /opt/python/cp312-cp312/bin/pip install "pymedphys[tests]==0.41.0"
 
 # docker commit <container_name>
-# docker tag <image_id> tbaudier/opengate_vip:0.1.0
-# docker run --rm tbaudier/opengate_vip:0.1.0 /opt/python/cp312-cp312/lib/python3.12/site-packages/opengate/tests/src/advanced_tests/linacs/run_linac_test.sh
-
+# docker tag <image_id> tbaudier/opengate_vip:0.1.1
+# docker run --rm tbaudier/opengate_vip:0.1.1 /opt/python/cp312-cp312/lib/python3.12/site-packages/opengate/tests/src/advanced_tests/linacs/run_linac_test.sh

opengate/tests/src/advanced_tests/linacs/comparison_deposited_dose_mc_tps.py

@@ -3,6 +3,7 @@
 
 import os
 from pathlib import Path
+
 import click
 import itk
 import matplotlib.colors as mcolors
@@ -192,7 +193,7 @@ def gamma_index_comparison(path, path_output):
         "max_gamma": 1.5,
         "random_subset": None,
         "local_gamma": True,
-        "ram_available": 40 * 2**29,  # 40 * 1/2 GB
+        "ram_available": 7 * 2**30,  # < 8 GB
         "interp_algo": "scipy",
     }
 

opengate/tests/src/advanced_tests/linacs/run_linac_test.sh

@@ -4,5 +4,4 @@ cd /opt/python/cp312-cp312/lib/python3.12/site-packages/opengate/tests/src/advan
 export PATH=/opt/python/cp312-cp312/bin:$PATH
 python run_vmat_mc.py --json_name data_advanced_test_linac/header.json
 python normalize_dose.py --path data_advanced_test_linac
-python comparison_deposited_dose_mc_tps.py --path data_advanced_test_linac --path_output output
-
+python comparison_deposited_dose_mc_tps.py --path data_advanced_test_linac --path_output output > output/output.log 2>&1

opengate/tests/src/advanced_tests/linacs/vmat_mc_helpers.py

@@ -1,9 +1,11 @@
+import itk
+import numpy as np
+
 import opengate as gate
-from opengate.tests import utility
-from opengate.contrib.linacs import elektaversa as versa
+from opengate import utility as ut
 from opengate.contrib.linacs import dicomrtplan as rtplan
-import numpy as np
-import itk
+from opengate.contrib.linacs import elektaversa as versa
+from opengate.tests import utility
 
 
 def information_img_patient(path_img=None, open_img=True, img=None):
@@ -90,8 +92,8 @@ def add_patient_image(
     patient.image = path_image + img
     patient.mother = name
     patient.material = "G4_AIR"  # material used by default
-    f1 = paths.data / "Schneider2000MaterialsTable.txt"
-    f2 = paths.data / "Schneider2000DensitiesTable.txt"
+    f1 = ut.get_data_folder() / "Schneider2000MaterialsTable.txt"
+    f2 = ut.get_data_folder() / "Schneider2000DensitiesTable.txt"
     tol = 0.05 * gcm3
     patient.voxel_materials, materials = (
         gate.geometry.materials.HounsfieldUnit_to_material(sim, tol, f1, f2)