chore: Move pyproject.toml into root to make more natural invocations

Author: effigies

.github/workflows/update-data.yml

@@ -32,8 +32,7 @@ jobs:
           restore-keys: git-repos-
 
       - name: Run pipeline
-        working-directory: code
-        run: uv run openneuro-dashboard run-all --output-dir ../data --cache-dir ~/.cache/openneuro-dashboard/repos
+        run: uv run openneuro-dashboard run-all
 
       - name: Commit and push if changed
         run: |

README.md

@@ -91,7 +91,6 @@ data/datasets/{id}/
 ## Setup
 
 ```bash
-cd code
 uv sync
 ```
 
@@ -102,29 +101,26 @@ Requires Python 3.14+.
 ### Full Pipeline
 
 ```bash
-cd code
-uv run openneuro-dashboard run-all --output-dir ../data
+uv run openneuro-dashboard run-all
 ```
 
 ### Individual Stages
 
 ```bash
-cd code
-
 # Stage 1: Fetch GraphQL data
-uv run openneuro-dashboard fetch-graphql --output-dir ../data
+uv run openneuro-dashboard fetch-graphql
 
 # Stage 2: Check GitHub mirrors
-uv run openneuro-dashboard check-github --output-dir ../data
+uv run openneuro-dashboard check-github
 
 # Stage 3: Check S3 versions
-uv run openneuro-dashboard check-s3-version --output-dir ../data
+uv run openneuro-dashboard check-s3-version
 
 # Stage 4: Check S3 files
-uv run openneuro-dashboard check-s3-files --output-dir ../data --cache-dir ~/.cache/openneuro-dashboard/repos
+uv run openneuro-dashboard check-s3-files --cache-dir ~/.cache/openneuro-dashboard/repos
 
 # Stage 5: Summarize
-uv run openneuro-dashboard summarize --output-dir ../data
+uv run openneuro-dashboard summarize
 ```
 
 Common options:
@@ -135,14 +131,12 @@ Common options:
 ### Generating Test Data
 
 ```bash
-cd code
-uv run openneuro-dashboard gen-data --output-dir ../data --num-datasets 50 --seed 42
+uv run openneuro-dashboard gen-data --num-datasets 50 --seed 42
 ```
 
 ## Running Tests
 
 ```bash
-cd code
 uv run --group test pytest -v
 ```
 

code/pyproject.toml pyproject.tomlcode/pyproject.toml renamed to pyproject.toml

@@ -26,9 +26,12 @@ openneuro-dashboard = "openneuro_dashboard.__main__:app"
 requires = ["uv_build>=0.10.2,<0.11.0"]
 build-backend = "uv_build"
 
+[tool.uv.build-backend]
+module-root = "code/src"
+
 ## Use this to work on paired refactors
 # [tool.uv.sources]
-# ondiagnostics = { path = "../../ondiagnostics", editable = true }
+# ondiagnostics = { path = "../ondiagnostics", editable = true }
 
 [dependency-groups]
 dev = [