Release v0.10.1

- Fixed protein slicing with negative indices
- Bump python version constraints

Author: markgeejw

.gitignore

@@ -1,3 +1,4 @@
+.vscode
 
 # SECRETS FILE
 secrets.config
@@ -363,3 +364,6 @@ __marimo__/
 # Streamlit
 .streamlit/secrets.toml
 /data/
+
+.envrc
+/.direnv/

flake.nix

@@ -15,7 +15,13 @@
         pkgs = nixpkgs.legacyPackages.${system};
       in
       {
-        devShells.default = pkgs.mkShell { packages = [ pkgs.bashInteractive ]; };
+        devShells.default = pkgs.mkShell {
+          packages = [ pkgs.bashInteractive ];
+          shellHook = ''
+            pixi i -e dev
+            eval $(pixi shell-hook -e dev)
+          '';
+        };
       }
     );
 }

openprotein/molecules/protein.py

@@ -156,7 +156,7 @@ def __getitem__(
         if isinstance(idx, int):
             idx = np.array([idx], dtype=int)
         elif isinstance(idx, slice):
-            idx = np.arange(idx.start or 0, idx.stop or len(self), idx.step or 1)
+            pass
         elif not isinstance(idx, np.ndarray):
             idx = np.fromiter(idx, dtype=int)
         new = Protein(

pyproject.toml

@@ -25,7 +25,7 @@ dependencies = [
   "gemmi>=0.6.0,<0.8",
   "tomli>=2.3.0,<3",
 ]
-requires-python = ">=3.10,<3.13"
+requires-python = ">=3.10,<3.15"
 
 [dependency-groups]
 dev = [