Use PythonCall (#286)

- Update to ControlPlots 0.3, which uses PythonCall
- Updates ControlPlots compatibility bounds across test and example projects.
- Adds CondaPkg environment ignores and libexpat discovery in bin/setup_env.

Author: ufechner7

.gitignore

@@ -94,3 +94,5 @@ examples_3d/Manifest.toml
 Manifest-v1.13.toml
 data/windfield_*.npz
 data/gui.yaml
+examples/.CondaPkg/
+examples_3d/.CondaPkg/

Manifest-v1.11.toml.default

@@ -2,7 +2,7 @@
 
 julia_version = "1.11.9"
 manifest_format = "2.0"
-project_hash = "b1faf763d955cbb5585d42316c834916ca7cc9d1"
+project_hash = "b6c04763afc6f0257399e153aeeb299649357b2a"
 
 [[deps.ADTypes]]
 git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd"
@@ -83,9 +83,9 @@ version = "1.1.2"
 
 [[deps.ArrayInterface]]
 deps = ["Adapt", "LinearAlgebra"]
-git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573"
+git-tree-sha1 = "3d0cabd25fab32390e3bcb82cd67e700aebd9816"
 uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
-version = "7.24.0"
+version = "7.25.0"
 
     [deps.ArrayInterface.extensions]
     ArrayInterfaceAMDGPUExt = "AMDGPU"
@@ -296,11 +296,11 @@ git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8"
 uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
 version = "2.5.1"
 
-[[deps.Conda]]
-deps = ["Downloads", "JSON", "VersionParsing"]
-git-tree-sha1 = "8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9"
-uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d"
-version = "1.10.3"
+[[deps.CondaPkg]]
+deps = ["JSON", "Markdown", "MicroMamba", "Pidfile", "Pkg", "Preferences", "Scratch", "TOML", "pixi_jll"]
+git-tree-sha1 = "0300af904a8c8d41ff715a60a6959136d22b8572"
+uuid = "992eb4ea-22a4-4c89-a5bb-47a3300528ab"
+version = "0.2.34"
 
 [[deps.ConstructionBase]]
 git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb"
@@ -318,10 +318,10 @@ version = "1.6.0"
     StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
 
 [[deps.ControlPlots]]
-deps = ["JLD2", "LaTeXStrings", "Pkg", "Printf", "PyPlot", "StaticArraysCore"]
-git-tree-sha1 = "fb1cf8d1213c9f2908f8682f58f7ec252f6cc171"
+deps = ["JLD2", "LaTeXStrings", "Pkg", "Printf", "PythonPlot", "StaticArraysCore"]
+git-tree-sha1 = "6cbab46fef00616339eb4c3e10faeb11b408a9cc"
 uuid = "23c2ee80-7a9e-4350-b264-8e670f12517c"
-version = "0.2.15"
+version = "0.3.0"
 weakdeps = ["ControlSystemsBase"]
 
     [deps.ControlPlots.extensions]
@@ -451,9 +451,9 @@ version = "1.15.1"
 
 [[deps.DifferentiationInterface]]
 deps = ["ADTypes", "LinearAlgebra"]
-git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b"
+git-tree-sha1 = "2147a95a217cc8a78ec96ee03581adf129468e49"
 uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63"
-version = "0.7.17"
+version = "0.7.18"
 
     [deps.DifferentiationInterface.extensions]
     DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore"
@@ -465,6 +465,7 @@ version = "0.7.17"
     DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"]
     DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"]
     DifferentiationInterfaceGTPSAExt = "GTPSA"
+    DifferentiationInterfaceHyperHessiansExt = "HyperHessians"
     DifferentiationInterfaceMooncakeExt = "Mooncake"
     DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"]
     DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"]
@@ -489,6 +490,7 @@ version = "0.7.17"
     ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
     GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527"
     GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8"
+    HyperHessians = "06b494a0-c8e0-40cc-ad32-d99506a00a6c"
     Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6"
     PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b"
     ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
@@ -830,9 +832,9 @@ weakdeps = ["UnPack"]
 
 [[deps.JLLWrappers]]
 deps = ["Artifacts", "Preferences"]
-git-tree-sha1 = "0533e564aae234aff59ab625543145446d8b6ec2"
+git-tree-sha1 = "7204148362dafe5fe6a273f855b8ccbe4df8173e"
 uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
-version = "1.7.1"
+version = "1.8.0"
 
 [[deps.JSON]]
 deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"]
@@ -854,7 +856,7 @@ version = "0.2.1"
 deps = ["AtmosphericModels", "Dierckx", "DiffEqBase", "DiscretePIDs", "DocStringExtensions", "Interpolations", "KitePodModels", "KiteUtils", "LinearAlgebra", "LinearSolve", "Logging", "NLSolversBase", "NLsolve", "NonlinearSolve", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqNonlinearSolve", "Parameters", "Pkg", "PrecompileTools", "REPL", "Reexport", "Rotations", "StaticArrays", "Statistics", "Sundials", "Suppressor", "WinchModels"]
 path = ".."
 uuid = "b94af626-7959-4878-9336-2adc27959007"
-version = "0.11.10"
+version = "0.11.12"
 
 [[deps.KitePodModels]]
 deps = ["DocStringExtensions", "KiteUtils", "Reexport"]
@@ -965,9 +967,9 @@ weakdeps = ["ChainRulesCore", "SparseArrays", "Statistics"]
 
 [[deps.LinearSolve]]
 deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"]
-git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0"
+git-tree-sha1 = "3ccb9eaa37e39f54a93d0ef1ad58491ab68dbf5b"
 uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
-version = "3.75.0"
+version = "3.78.0"
 
     [deps.LinearSolve.extensions]
     LinearSolveAMDGPUExt = "AMDGPU"
@@ -992,12 +994,12 @@ version = "3.75.0"
     LinearSolveKrylovKitExt = "KrylovKit"
     LinearSolveMetalExt = "Metal"
     LinearSolveMooncakeExt = "Mooncake"
-    LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"]
-    LinearSolvePETScExt = ["PETSc", "SparseArrays"]
+    LinearSolvePETScExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"]
     LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"]
     LinearSolveParUExt = ["ParU_jll", "SparseArrays"]
     LinearSolvePardisoExt = ["Pardiso", "SparseArrays"]
     LinearSolveRecursiveFactorizationExt = "RecursiveFactorization"
+    LinearSolveSTRUMPACKExt = ["SparseArrays", "STRUMPACK_jll"]
     LinearSolveSparseArraysExt = "SparseArrays"
     LinearSolveSparspakExt = ["SparseArrays", "Sparspak"]
 
@@ -1029,6 +1031,7 @@ version = "3.75.0"
     Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2"
     PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9"
     RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4"
+    STRUMPACK_jll = "86fbd0b9-476f-557c-b766-62c724b42d8c"
     SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
     SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1"
     Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac"
@@ -1095,9 +1098,9 @@ version = "0.1.3"
 
 [[deps.MatrixEquations]]
 deps = ["LinearAlgebra", "LinearMaps"]
-git-tree-sha1 = "51f3fade0b4ff2cf90b36b3312425460631abb56"
+git-tree-sha1 = "cfcced8334cbd6829258f0ef883a1bc7475f6439"
 uuid = "99c1a7ee-ab34-5fd5-8076-27c950a045f4"
-version = "2.5.6"
+version = "2.5.7"
 
 [[deps.MatrixPencils]]
 deps = ["LinearAlgebra", "MatrixEquations", "Polynomials", "Random"]
@@ -1125,6 +1128,12 @@ git-tree-sha1 = "0a7fe9ae5a02fe24e9f041d0200f6173606ce02a"
 uuid = "ebf956a0-ef5e-43be-9fb1-27952996e635"
 version = "1.0.4"
 
+[[deps.MicroMamba]]
+deps = ["Pkg", "Scratch", "micromamba_jll"]
+git-tree-sha1 = "535656ce55266bfed0575cd051acc4f36dc869a0"
+uuid = "0b3b1443-0f03-428d-bdfb-f27f9c1191ea"
+version = "0.1.15"
+
 [[deps.Missings]]
 deps = ["DataAPI"]
 git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d"
@@ -1285,10 +1294,10 @@ weakdeps = ["Adapt"]
     OffsetArraysAdaptExt = "Adapt"
 
 [[deps.OpenBLAS32_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "dd0d9979377e43918a80486a562ddedcc6d9bdf3"
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"]
+git-tree-sha1 = "565175ce692c065e50ad32efbb61ba69b1586593"
 uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2"
-version = "0.3.33+0"
+version = "0.3.33+1"
 
 [[deps.OpenBLAS_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
@@ -1382,6 +1391,12 @@ git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8"
 uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
 version = "2.8.4"
 
+[[deps.Pidfile]]
+deps = ["FileWatching", "Test"]
+git-tree-sha1 = "2d8aaf8ee10df53d0dfb9b8ee44ae7c04ced2b03"
+uuid = "fa939f87-e72e-5be4-a000-7fc836dbe307"
+version = "1.3.0"
+
 [[deps.Pkg]]
 deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"]
 uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
@@ -1471,17 +1486,25 @@ git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe"
 uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d"
 version = "1.4.0"
 
-[[deps.PyCall]]
-deps = ["Conda", "Dates", "Libdl", "LinearAlgebra", "MacroTools", "Serialization", "VersionParsing"]
-git-tree-sha1 = "9816a3826b0ebf49ab4926e2b18842ad8b5c8f04"
-uuid = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
-version = "1.96.4"
+[[deps.PythonCall]]
+deps = ["CondaPkg", "Dates", "Libdl", "MacroTools", "Markdown", "Pkg", "Serialization", "Tables", "UnsafePointers"]
+git-tree-sha1 = "982f3f017f08d31202574ef6bdcf8b3466430bea"
+uuid = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d"
+version = "0.9.31"
 
-[[deps.PyPlot]]
-deps = ["Colors", "LaTeXStrings", "PyCall", "Sockets", "Test", "VersionParsing"]
-git-tree-sha1 = "d2c2b8627bbada1ba00af2951946fb8ce6012c05"
-uuid = "d330b81b-6aea-500a-939a-2ce795aea3ee"
-version = "2.11.6"
+    [deps.PythonCall.extensions]
+    CategoricalArraysExt = "CategoricalArrays"
+    PyCallExt = "PyCall"
+
+    [deps.PythonCall.weakdeps]
+    CategoricalArrays = "324d7699-5711-5eae-9e2f-1d82baa6b597"
+    PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
+
+[[deps.PythonPlot]]
+deps = ["Colors", "CondaPkg", "LaTeXStrings", "PythonCall", "Sockets", "Test", "VersionParsing"]
+git-tree-sha1 = "409884283434a04092ddf1d9594c22bc097d5d9a"
+uuid = "274fc56d-3b97-40fa-a1cd-1b4a50311bf9"
+version = "1.0.6"
 
 [[deps.Quaternions]]
 deps = ["LinearAlgebra", "Random", "RealDot"]
@@ -1612,6 +1635,11 @@ git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c"
 uuid = "94e857df-77ce-4151-89e5-788b33177be4"
 version = "0.1.0"
 
+[[deps.SafeTestsets]]
+git-tree-sha1 = "81ec49d645af090901120a1542e67ecbbe044db3"
+uuid = "1bc83da4-3b8d-516f-aca4-4fe02f6d838f"
+version = "0.1.0"
+
 [[deps.SciMLBase]]
 deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"]
 git-tree-sha1 = "a017ed325ac5e11438c888864fe83b124bb171b7"
@@ -1665,9 +1693,9 @@ version = "0.1.13"
 
 [[deps.SciMLLogging]]
 deps = ["Logging", "LoggingExtras", "Preferences"]
-git-tree-sha1 = "0161be062570af4042cf6f69e3d5d0b0555b6927"
+git-tree-sha1 = "4e1e21f14a284f892eb62923a356c70a2a0c68e1"
 uuid = "a6db7da4-7206-11f0-1eab-35f2a5dbe1d1"
-version = "1.9.1"
+version = "1.10.1"
 
     [deps.SciMLLogging.extensions]
     SciMLLoggingTracyExt = "Tracy"
@@ -1676,16 +1704,21 @@ version = "1.9.1"
     Tracy = "e689c965-62c8-4b79-b2c5-8359227902fd"
 
 [[deps.SciMLOperators]]
-deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"]
-git-tree-sha1 = "4a3bd21622633a70fde04bc6d072f59e482ff66f"
+deps = ["Accessors", "Adapt", "ArrayInterface", "DocStringExtensions", "LinearAlgebra", "SafeTestsets"]
+git-tree-sha1 = "50e6ec6879eab12b039924d5a10b91c95bf9bf7f"
 uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961"
-version = "1.18.0"
-weakdeps = ["SparseArrays", "StaticArraysCore"]
+version = "1.21.0"
 
     [deps.SciMLOperators.extensions]
+    SciMLOperatorsLoopVectorizationExt = "LoopVectorization"
     SciMLOperatorsSparseArraysExt = "SparseArrays"
     SciMLOperatorsStaticArraysCoreExt = "StaticArraysCore"
 
+    [deps.SciMLOperators.weakdeps]
+    LoopVectorization = "bdcacae8-1622-11e9-2a5c-532679323890"
+    SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
+    StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"
+
 [[deps.SciMLPublic]]
 git-tree-sha1 = "0ba076dbdce87ba230fff48ca9bca62e1f345c9b"
 uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b"
@@ -2045,6 +2078,11 @@ version = "1.0.2"
 uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
 version = "1.11.0"
 
+[[deps.UnsafePointers]]
+git-tree-sha1 = "c81331b3b2e60a982be57c046ec91f599ede674a"
+uuid = "e17b2a0c-0bdf-430a-bd0c-3a23cae4ff39"
+version = "1.0.0"
+
 [[deps.VersionParsing]]
 git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868"
 uuid = "81def892-9a0e-5fdd-b105-ffc91e053289"
@@ -2101,18 +2139,30 @@ deps = ["Artifacts", "Libdl"]
 uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
 version = "5.11.0+0"
 
+[[deps.micromamba_jll]]
+deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"]
+git-tree-sha1 = "717df6f6892af4ee13279a73aa58474e58a88667"
+uuid = "f8abcde7-e9b7-5caa-b8af-a437887ae8e4"
+version = "2.3.1+0"
+
 [[deps.nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
 version = "1.59.0+0"
 
 [[deps.oneTBB_jll]]
 deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"]
-git-tree-sha1 = "1350188a69a6e46f799d3945beef36435ed7262f"
+git-tree-sha1 = "da8c1f6eee04831f14edcfa5dae611d309807e57"
 uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e"
-version = "2022.0.0+1"
+version = "2022.3.0+0"
 
 [[deps.p7zip_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
 version = "17.4.0+2"
+
+[[deps.pixi_jll]]
+deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"]
+git-tree-sha1 = "f349584316617063160a947a82638f7611a8ef0f"
+uuid = "4d7b5844-a134-5dcd-ac86-c8f19cd51bed"
+version = "0.41.3+0"