Merge pull request #6 from mihaitodor/rename-pisa-lite-to-pisa

Rename pisa-lite to pisa

Author: sreenathnair

.github/workflows/publish.yml

@@ -26,8 +26,8 @@ jobs:
                 push: true
                 platforms: linux/amd64,linux/arm64/v8
                 tags: |
-                    ${{ secrets.DOCKER_USERNAME }}/pisa-lite:${{ github.ref_name }}
-                    ${{ secrets.DOCKER_USERNAME }}/pisa-lite:latest
+                    ${{ secrets.DOCKER_USERNAME }}/pisa:${{ github.ref_name }}
+                    ${{ secrets.DOCKER_USERNAME }}/pisa:latest
 
     docker_build_and_push_to_gitlab:
         runs-on: ubuntu-latest

Dockerfile

@@ -3,23 +3,23 @@ FROM ubuntu:20.04 AS build
 RUN apt-get update && apt-get install -y g++ libz-dev
 
 # Copy dependencies
-COPY ccp4srs /usr/src/pisa-lite/ccp4srs
-COPY mmdb2 /usr/src/pisa-lite/mmdb2
-COPY pisa /usr/src/pisa-lite/pisa
-COPY pisalib /usr/src/pisa-lite/pisalib
-COPY ssm /usr/src/pisa-lite/ssm
-COPY compile.sh /usr/src/pisa-lite/compile.sh
+COPY ccp4srs /usr/src/pisa/ccp4srs
+COPY mmdb2 /usr/src/pisa/mmdb2
+COPY pisa /usr/src/pisa/pisa
+COPY pisalib /usr/src/pisa/pisalib
+COPY ssm /usr/src/pisa/ssm
+COPY compile.sh /usr/src/pisa/compile.sh
 
-WORKDIR /usr/src/pisa-lite
+WORKDIR /usr/src/pisa
 
-ENV SRCDIR=/usr/src/pisa-lite
+ENV SRCDIR=/usr/src/pisa
 
 # Compile
-RUN chmod +x /usr/src/pisa-lite/compile.sh
-RUN /usr/src/pisa-lite/compile.sh
+RUN chmod +x /usr/src/pisa/compile.sh
+RUN /usr/src/pisa/compile.sh
 
 FROM ubuntu:20.04
 
-COPY --from=build /usr/src/pisa-lite/build /usr/share/pisa-lite
+COPY --from=build /usr/src/pisa/build /usr/share/pisa
 
-ENV PATH=$PATH:/usr/share/pisa-lite
+ENV PATH=$PATH:/usr/share/pisa

README.md

@@ -77,7 +77,7 @@ If the flag --as-is is used, PISA will analyse the interfaces in the given input
 
 ## XML file
 
-PISA-lite generates the results in binary format. The data has to be converted into a human-readable XML format using the following command:
+PISA generates the results in binary format. The data has to be converted into a human-readable XML format using the following command:
 
 ```
 pisa name -xml {interfaces|assemblies} [cfg] > outputfile.xml

pisa_cfg

@@ -1,6 +1,6 @@
 # ------------------------------------------------------------------- #
 #                                                                     #
-#          This is configuratrion file for PISA-lite software.        #
+#          This is configuratrion file for PISA software.        #
 #                                                                     #
 #   When used in command-prompt mode, this file must be specified     #
 #       as last argument in thecommand line, or pointed out by        #
@@ -11,19 +11,19 @@
 
 #  DATA_ROOT must point on the directory to contain session
 #  directories.
-# For example: .../pisa-lite
+# For example: .../pisa
 DATA_ROOT
 /data/sessions
 
 
 #  SRS_DIR must point on the directory containing SRS files.
-# For example: .../pisa-lite/setup/srs
+# For example: .../pisa/setup/srs
 SRS_DIR
 /data/setup/srs
 
 
 #  MOLREF_DIR must point on the directory containing MolRef files.
-# For example: .../pisa-lite/setup/molref
+# For example: .../pisa/setup/molref
 MOLREF_DIR
 /data/setup/molref
 
@@ -34,12 +34,12 @@ MOLREF_DIR
 #          intfstats.dat
 #          syminfo_pisa.lib and
 #          rcsb_symops.dat
-# For example: .../pisa-lite/setup/pisastore
+# For example: .../pisa/setup/pisastore
 PISTORE_DIR
 /data/setup/pisastore
 
 
-# The following lines are required for running PISA-lite
+# The following lines are required for running PISA
 RASMOL_COM
 JMOL_COM
 CCP4MG_COM

setup/pisa_cfg_tmp

@@ -1,6 +1,6 @@
 # ------------------------------------------------------------------- #
 #                                                                     #
-#          This is configuratrion file for PISA-lite software.        #
+#          This is configuratrion file for PISA software.        #
 #                                                                     #
 #   When used in command-prompt mode, this file must be specified     #
 #       as last argument in thecommand line, or pointed out by        #
@@ -11,19 +11,19 @@
 
 #  DATA_ROOT must point on the directory to contain session
 #  directories.
-# For example: .../pisa-lite
+# For example: .../pisa
 DATA_ROOT
 path_dataroot
 
 
 #  SRS_DIR must point on the directory containing SRS files.
-# For example: .../pisa-lite/setup/srs
+# For example: .../pisa/setup/srs
 SRS_DIR
 path_to_setup/srs
 
 
 #  MOLREF_DIR must point on the directory containing MolRef files.
-# For example: .../pisa-lite/setup/molref
+# For example: .../pisa/setup/molref
 MOLREF_DIR
 path_to_setup/molref
 
@@ -34,12 +34,12 @@ path_to_setup/molref
 #          intfstats.dat
 #          syminfo_pisa.lib and
 #          rcsb_symops.dat
-# For example: .../pisa-lite/setup/pisastore
+# For example: .../pisa/setup/pisastore
 PISTORE_DIR
 path_to_setup/pisastore
 
 
-# The following lines are required for running PISA-lite
+# The following lines are required for running PISA
 RASMOL_COM
 JMOL_COM
 CCP4MG_COM