diff --git a/pyproject.toml b/pyproject.toml index 04a46a23..41b5212a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -32,7 +32,7 @@ dependencies = [ "pyyaml>=6,<7", "pycgns>=6.3,<7", "zarr>=3.1,<4", - "datasets>=2.18,<5", + "datasets>=2.18,<6", "numpy>=2.0,<3", "pydantic>=2.6,<3", ] diff --git a/src/plaid/cli/plaidcheck.py b/src/plaid/cli/plaidcheck.py index 713fe09e..23288433 100644 --- a/src/plaid/cli/plaidcheck.py +++ b/src/plaid/cli/plaidcheck.py @@ -524,6 +524,10 @@ def check_dataset( target_splits = target_splits & dataset_splits checksum_report = {} + # Track shape of each Global feature across all checked splits/samples to + # detect inconsistencies (e.g. a Global stored as a scalar in one sample + # and as a vector in another). + global_shape_observations: dict[str, dict[tuple, list[str]]] = {} for split in sorted(target_splits): dataset = datasetdict[split] converter = converterdict[split] @@ -595,6 +599,17 @@ def check_dataset( issue, ) + # Record the observed shape of this Global so we can later + # detect dimension mismatches across all checked samples + # (across splits). At this point ``_check_numeric_content`` + # already coerced ``value`` through ``np.asarray`` without + # error, so the same call here is safe. + if value is not None: + shape = tuple(np.asarray(value).shape) + global_shape_observations.setdefault(global_name, {}).setdefault( + shape, [] + ).append(f"{split}[{idx}]") + for time in sample.get_all_time_values(): local_bases = sample.get_base_names(time=time) for base in local_bases: @@ -625,6 +640,25 @@ def check_dataset( issue, ) + # Report Globals whose dimension/shape is not consistent across all + # checked samples (across splits). + for global_name, shape_to_locations in global_shape_observations.items(): + if len(shape_to_locations) <= 1: + continue + details = "; ".join( + f"shape={shape} at {locations[:5]}" + + (f" (+{len(locations) - 5} more)" if len(locations) > 5 else "") + for shape, locations in sorted( + shape_to_locations.items(), key=lambda kv: str(kv[0]) + ) + ) + report.add( + "error", + "GLOBAL_SHAPE_MISMATCH", + f"global/{global_name}", + f"Global '{global_name}' has inconsistent shapes across samples: {details}", + ) + # Compare checksums from every checked sample to flag identical sample data. checksum_values = list(checksum_report.values()) if len(checksum_report) != len(np.unique(checksum_values)): diff --git a/tests/cli/test_plaidcheck.py b/tests/cli/test_plaidcheck.py index 6fb571e3..b799fc04 100644 --- a/tests/cli/test_plaidcheck.py +++ b/tests/cli/test_plaidcheck.py @@ -633,6 +633,43 @@ def test_check_dataset_split_and_data_warnings_and_duplicates( assert any(msg.code == "DUPLICATED_DATA" for msg in report.messages) +def test_check_dataset_reports_global_shape_mismatch( + tmp_path: Path, monkeypatch +) -> None: + """Globals with inconsistent shapes across samples should be reported.""" + dataset = _make_minimal_layout(tmp_path) + + monkeypatch.setattr( + plaidcheck, + "load_infos_from_disk", + lambda path: _infos({"train": 2}), # noqa: ARG005 + ) + monkeypatch.setattr( + plaidcheck, + "load_metadata_from_disk", + lambda path: ({"train": {}}, {"Var": {}}, {"train": {}}, None), # noqa: ARG005 + ) + samples = [ + _FakeSampleForCheck(global_value=np.array(1.0)), + _FakeSampleForCheck(global_value=np.array([1.0, 2.0])), + ] + monkeypatch.setattr( + plaidcheck, + "init_from_disk", + lambda path: ( # noqa: ARG005 + {"train": _FakeDataset(2)}, + {"train": _FakeConverter(samples)}, + ), + ) + + report = check_dataset(dataset, splits=["train"]) + + mismatch_msgs = [m for m in report.messages if m.code == "GLOBAL_SHAPE_MISMATCH"] + assert len(mismatch_msgs) == 1 + assert mismatch_msgs[0].severity == "error" + assert "G" in mismatch_msgs[0].location + + def test_check_dataset_sample_conversion_error(tmp_path: Path, monkeypatch) -> None: """Checker should emit conversion errors when converter fails on an index.""" dataset = _make_minimal_layout(tmp_path) diff --git a/uv.lock b/uv.lock index 2b719e15..da99efbb 100644 --- a/uv.lock +++ b/uv.lock @@ -21,7 +21,7 @@ wheels = [ 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