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Merge branch 'rct-173' into 'main'
Add XML file to convert on export. See merge request plos/editorial_manager_transfer_service!5
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‎templates/xml/article_jats_1_2_aries.xml‎

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{% load settings text %}{# A template for encoding an submission.models.Article as JATS 1.2 #}{# Context: `article` `body` `include_declaration` `answer_fields` #}
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{% if include_declaration %}
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<?xml version="1.0" encoding="UTF-8"?>
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<!DOCTYPE article SYSTEM "JATS-archivearticle1-mathml3.dtd">
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{% endif %}
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{% if validation_error %}<!-- {{ validation_error }} -->{% endif %}
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<article
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article-type="{{ article.jats_article_type|default:'research-article' }}"
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dtd-version="1.2d1"
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xml:lang="{{ article.iso639_1_lang_code }}"
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xmlns:xlink="http://www.w3.org/1999/xlink"
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>
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<front>
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<journal-meta>
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<journal-id journal-id-type="publisher">{{ article.license.text }}</journal-id>
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<journal-title-group>
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<journal-title>{{ article.journal.name }}</journal-title>
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</journal-title-group>
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</journal-meta>
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<article-meta>
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<article-id pub-id-type="manuscript">{{ article.pk }}</article-id>
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{% if article.get_doi %}
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<article-id pub-id-type="doi">{{ article.get_doi }}</article-id>
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{% endif %}
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<article-categories>
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{% if article.section.jats_article_type %}
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<subj-group subj-group-type="Article Type">
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{% for item in article.section %}
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<subject id="atype-{{ item.id }}">{{ item.jats_article_type }}</subject>
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{% endfor %}
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</subj-group>
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{% endif %}
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{% if article.section.name %}
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<subj-group subj-group-type="Category">
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{% for item in article.section %}
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<subject>{{ item.name }}</subject>
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{% endfor %}
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</subj-group>
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{% endif %}
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</article-categories>
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<title-group>
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<article-title>{{ article.title }}</article-title>
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</title-group>
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<contrib-group>
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{% for item in article.frozen_authors_for_jats_contribs %}
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{% with author=item.author affiliations=item.affiliations %}
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<contrib contrib-type="author"{% if author.is_correspondence_author %} corresp="yes"{% endif %}>
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{% if author.order %}
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<role content-type="{{ author.order }}"/>
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{% endif %}
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{% if article.journal|setting:'use_credit' and author.credits.exists %}
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{% for credit_record in author.credits %}
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<role vocab="CRediT" vocab-term="{{ credit_record.get_role_display }}"/>
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{% endfor %}
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{% endif %}
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<name>
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<surname>{{ author.last_name }}</surname>
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<given-names>{{ author.given_names }}</given-names>
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{% if author.name_prefix %}
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<prefix>{{ author.name_prefix }}</prefix>
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{% endif %}
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</name>
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{% if author.orcid %}
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<contrib-id contrib-id-type="orcid"{% if author.orcid_uri %}
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authenticated="true"{% endif %}>{{ author.orcid }}
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</contrib-id>
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{% endif %}
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{% if author.email %}
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<email>{{ author.email }}</email>
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{% endif %}
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{% for affiliation in affiliations %}
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<xref ref-type="aff" rid="aff{{ forloop.parentloop.counter }}-{{ forloop.counter }}"/>
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{% endfor %}
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</contrib>
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{% if author.is_corporate %}
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<contrib contrib-type="author">
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<collab>{{ author.corporate_name }}</collab>
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</contrib>
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{% endif %}
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{% for affiliation in affiliations %}
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<aff id="aff{{ forloop.parentloop.counter }}-{{ forloop.counter }}">
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{% if affiliation.organization.uri %}
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<institution-wrap>
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<institution>{{ affiliation.organization.name }}</institution>
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{% if affiliation.organization.ror_id %}
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<institution-id institution-id-type="ROR">
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{{ affiliation.organization.uri }}
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</institution-id>
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{% endif %}
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</institution-wrap>
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{% else %}
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<institution>{{ affiliation.organization.name }}</institution>
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{% endif %}
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{% if affiliation.organization.title %}
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<institution
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content-type="position">{{ affiliation.organization.title }}</institution>
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{% endif %}
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{% if affiliation.organization.department %}
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<institution
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content-type="dept">{{ affiliation.organization.department }}</institution>
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{% endif %}
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{% for addrline in affiliation.organization.location %}
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<addr-line content-type="addrline{{ forloop.counter }}">{{ addrline }}</addr-line>
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{% endfor %}
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{% if affiliation.organization.country %}
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<country specific-use="us">{{ affiliation.organization.country }}</country>
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{% endif %}
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</aff>
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{% endfor %}
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{% endwith %}
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{% endfor %}
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</contrib-group>
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{% if article.has_manuscript_file %}
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<ext-link specific-use="Manuscript" xlink:href="{{ article.pk }}.docx" xlink:title="Manuscript"/>
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{% endif %}
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{% if article.url %}
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<ext-link ext-link-type="uri" xlink:href="{{ article.url }}" xlink:title="Research dataset 1"/>
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{% endif %}
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{% if article.date_submitted or article.date_accepted %}
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<history>
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{% if article.date_submitted %}
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<date date-type="received" iso-8601-date="{{ article.date_submitted|date:" Y-m-d" }}">
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<day>{{ article.date_submitted|date:"d" }}</day>
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<month>{{ article.date_submitted|date:"m" }}</month>
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<year>{{ article.date_submitted|date:"Y" }}</year>
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</date>
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{% endif %}
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{% if article.date_accepted %}
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<date date-type="accepted" iso-8601-date="{{ article.date_accepted|date:" Y-m-d" }}">
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<day>{{ article.date_accepted|date:"d" }}</day>
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<month>{{ article.date_accepted|date:"m" }}</month>
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<year>{{ article.date_accepted|date:"Y" }}</year>
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</date>
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{% endif %}
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</history>
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{% endif %}
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<abstract>{{ article.get_clean_abstract }}</abstract>
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{% if article.keywords.exists %}
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<kwd-group xml:lang="en">
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{% for keyword in article.keywords.all %}
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<kwd>{{ keyword.word }}</kwd>
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{% endfor %}
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</kwd-group>
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{% endif %}
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{% if article.funders.exists() %}
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<funding-group>
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{% for funder in article.funders.all %}
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<award-group>
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<funding-source>{{ funder.name }}
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{% if funder.fundref_id %}
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<named-content content-type="funder-id">{{ funder.fundref_id }}</named-content>
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{% endif %}
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</funding-source>
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{% if funder.funding_id %}
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<award-id>{{ funder.funding_id }}</award-id>
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{% endif %}
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{% if forloop.counter == 1 %}
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{% for author in article.frozen_authors_for_jats_contribs %}
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{% if author.is_correspondence_author and author.orcid %}
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<principal-award-recipient>
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<contrib-id contrib-id-type="orcid">{{ author.orcid }}</contrib-id>
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<name>
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<surname>{{ author.last_name }}</surname>
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<given-names>{{ author.given_names }}</given-names>
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</name>
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</principal-award-recipient>
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{% endif %}
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{% endfor %}
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{% endif %}
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</award-group>
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{% endfor %}
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</funding-group>
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{% endif %}
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{% if article.data_figure_files.exists() %}
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<counts>
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<fig-count count="{{ article.data_figure_files.all().count() }}"/>
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</counts>
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{% endif %}
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{% if answer_fields %}
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<custom-meta-group>
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{% for field in answer_fields %}
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<custom-meta id="ques_{{ forloop.counter }}" specific-use="question">
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<meta-name>{{ field.field.name }}</meta-name>
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<meta-value>{{ field.answer }}</meta-value>
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</custom-meta>
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{% endfor %}
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</custom-meta-group>
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{% endif %}
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</article-meta>
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</front>
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{% if body %}
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<body>
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{% if article.data_figure_files %}
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{% for figure in article.data_figure_files %}
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<fig fig-type="color figure" specific-use="High_res_figure">
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<label>Figure {{ forloop.counter }}</label>
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<graphic xlink:href="{{ figure.name() }}"/>
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</fig>
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{% endfor %}
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{% endif %}
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{% if article.supplementary_files %}
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{% for suppFile in article.supplementary_files %}
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<supplementary-material specific-use="supplementary_file" xlink:href="{{ suppFile }}">
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<label>Video {{ forloop.counter }}</label>
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</supplementary-material>
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{% endfor %}
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{% endif %}
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</body>
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{% endif %}
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</article>

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