-
Notifications
You must be signed in to change notification settings - Fork 0
Data model update - add the *_source_text fields - approved #1
Copy link
Copy link
Open
Description
lindaxiang
opened on Jan 13, 2026
Issue body actions
- All “*_source_text” fields are optional and intended to preserve verbatim input from the source records
- Preserve "source_text" for auditing and future model training of AI-assisted ontology mapping
| Field Name | Description |
|---|---|
| disease_source_text | Free-text disease description as originally recorded in the source system, prior to ontology mapping. |
| drug_source_text | Free-text drug name or description as recorded in the source, prior to normalization or ontology mapping. |
| procedure_source_text | Free-text description of the procedure as entered in the source data, before mapping to standardized terms. |
| procedure_body_site_source_text | Free-text description of the anatomical site for a procedure, as originally captured in the source. |
| radiation_modality_source_text | Free-text description of the radiation modality as provided in the source record, before mapping to controlled terms. |
| anatomical_site_irradiated_source_text | Free-text description of the anatomical site irradiated, as originally recorded in the source. |
| phenotype_source_text | Free-text description of a phenotype or clinical feature, prior to ontology mapping. |
| comorbidity_source_text | Free-text description of a comorbidity, as recorded in the source system, before mapping to controlled vocabularies. |
| measurement_source_text | Free-text representation of a measurement, observation, or test, as originally recorded in the source. |
| measurement_unit_source_text | Free-text representation of the unit of measurement as originally recorded in the source system, prior to mapping to a standardized unit ontology (e.g., UO or UCUM). This preserves verbatim units provided by labs or instruments. |
| exposure_source_text | Free-text description of an exposure (e.g., environmental, occupational), prior to mapping to ontology terms. |
| specimen_tissue_source_text | Free-text description of the tissue source for a specimen, as captured in the source system. |
| specimen_anatomic_location_source_text | Free-text description of the anatomical location of specimen collection, prior to ontology coding. |
| molecular_type_source_text | Free-text description of the molecular analyte type (e.g., DNA, RNA, protein) as captured in the source record. |
| assay_type_source_text | Free-text description of the assay type used, as originally recorded in the source system. |
| instrument_source_text | Free-text description of the sequencing instrument or platform as originally recorded in the source, prior to ontology mapping. |
| library_layout_source_text | Free-text description of the sequencing library layout as originally recorded in the source system. |
Reactions are currently unavailable
Metadata
Metadata
Assignees
Labels
No labels
Type
Fields
Give feedbackNo fields configured for issues without a type.