NECCTONsimulations/NECCTON_copernicus_downloaded.json at main · Parcels-code/NECCTONsimulations · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
{
    "use_3D": true,
    "allow_time_extrapolation": false,
    "verbose_delete": false,
    "use_mixing": true,
    "use_biofouling": true,
    "use_stokes": true,
    "use_wind": false,
    "ocean": {
        "modelname": "NEMO0083",
        "directory": "/storage/shared/oceanparcels/output_data/data_Michael/NECCTONsimulations/data/copernicus_data/",
        "filename_style": "cmems_mod_glo_phy_my_%4i*.nc",
        "bathymetry_mesh": "cmems_mod_glo_phy_my_static.nc",
        "variables": {
            "U": "uo",
            "V": "vo",
            "conservative_temperature": "thetao",
            "absolute_salinity": "so"
        },
        "dimensions": {
            "lon": "longitude",
            "lat": "latitude",
            "depth": "depth",
            "time": "time"
        },
        "indices": {},
        "bathymetry_variables": {
            "bathymetry": "deptho"
        },
        "bathymetry_dimensions": {
            "lon": "longitude",
            "lat": "latitude"
        }
    },
    "bgc": {
        "directory": "/storage/shared/oceanparcels/output_data/data_Michael/NECCTONsimulations/data/copernicus_data/",
        "filename_style": "cmems_mod_glo_bgc_my_",
        "variables": {
            "pp_phyto": "nppv",
            "bio_nanophy": "phyc"
        },
        "dimensions": {
            "lon": "longitude",
            "lat": "latitude",
            "depth": "depth",
            "time": "time"
        },
        "indices": {},
        "constants": {
            "biofilm_density": 1388.0,
            "algae_cell_volume": 2e-16,
            "K": 1.3805834190672156e-23,
            "R20": 1.1574074074074074e-06,
            "Q10": 2.13,
            "Gamma": 2.0,
            "carbon_molecular_weight": 12.0,
            "collision_probability": 1.0,
            "algae_mortality_rate": 1.0,
            "algae_respiration_f": 1.0
        }
    },
    "stokes": {
        "directory": "/storage/shared/oceanparcels/output_data/data_Michael/NECCTONsimulations/data/copernicus_data/",
        "filename_style": "cmems_mod_glo_wav_my_%4i*.nc",
        "variables": {
            "Stokes_U": "VSDX",
            "Stokes_V": "VSDY",
            "wave_Tp": "VTPK"
        },
        "dimensions": {
            "lon": "longitude",
            "lat": "latitude",
            "time": "time"
        },
        "indices": {}
    },
    "wind": {
        "directory": "-",
        "filename_style": "-",
        "variables": {
            "Wind_U": "u10",
            "Wind_V": "v10"
        },
        "dimensions": {
            "lat": "latitude",
            "lon": "longitude",
            "time": "time"
        },
        "indices": {}
    },
    "unbeaching": {
        "filename": "input_data/NEMO0083/land_current_NEMO0083.nc",
        "variables": {
            "unbeach_U": "land_current_u",
            "unbeach_V": "land_current_v"
        },
        "dimensions": {
            "lat": "lat",
            "lon": "lon"
        }
    },
    "simulation": {
        "start_date": null,
        "runtime": null,
        "dt_write": null,
        "dt_timestep": null
    },
    "release_maps": {
        "coastal": "testing/coastal_NECCTON_domain_NEMO0083.csv",
        "rivers": "testing/rivers_NECCTON_domain_NEMO0083.csv",
        "fisheries": "testing/fisheries_NECCTON_domain_NEMO0083.csv",
        "global_concentrations": "input_data/NEMO0083/global_concentrations_NEMO0083.csv"
    }
}