Add xfail markers

Author: VeckoTheGecko

tests/test_advection.py

@@ -58,6 +58,7 @@ def depth():
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 def test_advection_zonal(lon, lat, depth):
     """Particles at high latitude move geographically faster due to the pole correction in `GeographicPolar`."""
     npart = 10
@@ -90,6 +91,7 @@ def test_advection_zonal(lon, lat, depth):
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 def test_advection_meridional(lon, lat):
     """Particles at high latitude move geographically faster due to the pole correction in `GeographicPolar`."""
     npart = 10
@@ -104,6 +106,7 @@ def test_advection_meridional(lon, lat):
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 def test_advection_3D():
     """Flat 2D zonal flow that increases linearly with depth from 0 m/s to 1 m/s."""
     xdim = ydim = zdim = 2
@@ -126,6 +129,7 @@ def test_advection_3D():
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize("direction", ["up", "down"])
 @pytest.mark.parametrize("wErrorThroughSurface", [True, False])
 def test_advection_3D_outofbounds(direction, wErrorThroughSurface):
@@ -172,6 +176,7 @@ def SubmergeParticle(particle, fieldset, time):  # pragma: no cover
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize("rk45_tol", [10, 100])
 def test_advection_RK45(lon, lat, rk45_tol):
     npart = 10
@@ -330,6 +335,7 @@ def test_advection_periodic_zonal_meridional():
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize("u", [-0.3, np.array(0.2)])
 @pytest.mark.parametrize("v", [0.2, np.array(1)])
 @pytest.mark.parametrize("w", [None, -0.2, np.array(0.7)])
@@ -408,6 +414,7 @@ def fieldset_stationary():
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize(
     "method, rtol, diffField",
     [
@@ -443,6 +450,7 @@ def test_stationary_eddy(fieldset_stationary, method, rtol, diffField):
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 def test_stationary_eddy_vertical():
     npart = 1
     lon = np.linspace(12000, 21000, npart)
@@ -514,6 +522,7 @@ def fieldset_moving():
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize(
     "method, rtol, diffField",
     [
@@ -592,6 +601,7 @@ def fieldset_decaying():
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize(
     "method, rtol, diffField",
     [
@@ -633,6 +643,7 @@ def test_decaying_eddy(fieldset_decaying, method, rtol, diffField):
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 def test_analyticalAgrid():
     lon = np.arange(0, 15, dtype=np.float32)
     lat = np.arange(0, 15, dtype=np.float32)

tests/test_diffusion.py

@@ -18,6 +18,7 @@
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize("mesh", ["spherical", "flat"])
 def test_fieldKh_Brownian(mesh):
     xdim = 200
@@ -52,6 +53,7 @@ def test_fieldKh_Brownian(mesh):
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize("mesh", ["spherical", "flat"])
 @pytest.mark.parametrize("kernel", [AdvectionDiffusionM1, AdvectionDiffusionEM])
 def test_fieldKh_SpatiallyVaryingDiffusion(mesh, kernel):
@@ -86,6 +88,7 @@ def test_fieldKh_SpatiallyVaryingDiffusion(mesh, kernel):
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize("lambd", [1, 5])
 def test_randomexponential(lambd):
     fieldset = create_fieldset_zeros_conversion()
@@ -113,6 +116,7 @@ def vertical_randomexponential(particle, fieldset, time):  # pragma: no cover
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize("mu", [0.8 * np.pi, np.pi])
 @pytest.mark.parametrize("kappa", [2, 4])
 def test_randomvonmises(mu, kappa):

tests/test_field.py

@@ -12,6 +12,7 @@
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 def test_field_from_netcdf_variables():
     filename = str(TEST_DATA / "perlinfieldsU.nc")
     dims = {"lon": "x", "lat": "y"}
@@ -32,6 +33,7 @@ def test_field_from_netcdf_variables():
 
 
 @pytest.mark.v4remove
+@pytest.mark.xfail(reason="GH1946")
 def test_field_from_netcdf():
     filenames = {
         "lon": str(TEST_DATA / "mask_nemo_cross_180lon.nc"),
@@ -44,6 +46,7 @@ def test_field_from_netcdf():
 
 
 @pytest.mark.v4remove
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize(
     "calendar, cftime_datetime", zip(_get_cftime_calendars(), _get_cftime_datetimes(), strict=True)
 )

tests/test_fieldset.py

@@ -56,6 +56,7 @@ def to_xarray_dataset(data: dict[str, np.array], dimensions: dict[str, np.array]
 
 
 @pytest.mark.v4remove
+@pytest.mark.xfail(reason="GH1946")
 @pytest.fixture
 def multifile_fieldset(tmp_path):
     stem = "test_subsets"
@@ -79,6 +80,7 @@ def multifile_fieldset(tmp_path):
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize("xdim", [100, 200])
 @pytest.mark.parametrize("ydim", [100, 200])
 def test_fieldset_from_data(xdim, ydim):
@@ -101,6 +103,7 @@ def test_fieldset_vmin_vmax():
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize("ttype", ["float", "datetime64"])
 @pytest.mark.parametrize("tdim", [1, 20])
 def test_fieldset_from_data_timedims(ttype, tdim):
@@ -116,6 +119,7 @@ def test_fieldset_from_data_timedims(ttype, tdim):
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize("xdim", [100, 200])
 @pytest.mark.parametrize("ydim", [100, 50])
 def test_fieldset_from_data_different_dimensions(xdim, ydim):
@@ -146,6 +150,7 @@ def test_fieldset_from_data_different_dimensions(xdim, ydim):
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 def test_fieldset_from_modulefile():
     nemo_fname = str(TEST_DATA / "fieldset_nemo.py")
     nemo_error_fname = str(TEST_DATA / "fieldset_nemo_error.py")
@@ -165,6 +170,7 @@ def test_fieldset_from_modulefile():
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 def test_field_from_netcdf_fieldtypes():
     filenames = {
         "varU": {
@@ -191,6 +197,7 @@ def test_field_from_netcdf_fieldtypes():
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 def test_fieldset_from_agrid_dataset():
     filenames = {
         "lon": str(TEST_DATA / "mask_nemo_cross_180lon.nc"),
@@ -203,6 +210,7 @@ def test_fieldset_from_agrid_dataset():
 
 
 @pytest.mark.v4remove
+@pytest.mark.xfail(reason="GH1946")
 def test_fieldset_from_cgrid_interpmethod():
     filenames = {
         "lon": str(TEST_DATA / "mask_nemo_cross_180lon.nc"),
@@ -218,6 +226,7 @@ def test_fieldset_from_cgrid_interpmethod():
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize("calltype", ["from_data", "from_nemo"])
 def test_illegal_dimensionsdict(calltype):
     with pytest.raises(NameError):
@@ -234,6 +243,7 @@ def test_illegal_dimensionsdict(calltype):
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize("xdim", [100, 200])
 @pytest.mark.parametrize("ydim", [100, 200])
 def test_add_field(xdim, ydim, tmpdir):
@@ -245,6 +255,7 @@ def test_add_field(xdim, ydim, tmpdir):
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize("dupobject", ["same", "new"])
 def test_add_duplicate_field(dupobject):
     data, dimensions = generate_fieldset_data(100, 100)
@@ -260,6 +271,7 @@ def test_add_duplicate_field(dupobject):
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize("fieldtype", ["normal", "vector"])
 def test_add_field_after_pset(fieldtype):
     data, dimensions = generate_fieldset_data(100, 100)
@@ -282,6 +294,7 @@ def test_fieldset_samegrids_from_file(multifile_fieldset):
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize("gridtype", ["A", "C"])
 def test_fieldset_dimlength1_cgrid(gridtype):
     fieldset = FieldSet.from_data({"U": 0, "V": 0}, {"lon": 0, "lat": 0})
@@ -304,6 +317,7 @@ def assign_dataset_timestamp_dim(ds, timestamp):
 
 
 @pytest.mark.v4remove
+@pytest.mark.xfail(reason="GH1946")
 def test_fieldset_diffgrids_from_file(tmp_path):
     """Test for subsetting fieldset from file using indices dict."""
     stem = "test_subsets"
@@ -335,6 +349,7 @@ def test_fieldset_diffgrids_from_file(tmp_path):
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 def test_fieldset_diffgrids_from_file_data(multifile_fieldset):
     """Test for subsetting fieldset from file using indices dict."""
     data, dimensions = generate_fieldset_data(100, 100)
@@ -349,6 +364,7 @@ def test_fieldset_diffgrids_from_file_data(multifile_fieldset):
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 def test_fieldset_samegrids_from_data():
     """Test for subsetting fieldset from file using indices dict."""
     data, dimensions = generate_fieldset_data(100, 100)
@@ -365,6 +381,7 @@ def addConst(particle, fieldset, time):  # pragma: no cover
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 def test_fieldset_constant():
     data, dimensions = generate_fieldset_data(100, 100)
     fieldset = FieldSet.from_data(data, dimensions)
@@ -380,6 +397,7 @@ def test_fieldset_constant():
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize("swapUV", [False, True])
 def test_vector_fields(swapUV):
     lon = np.linspace(0.0, 10.0, 12, dtype=np.float32)
@@ -404,6 +422,7 @@ def test_vector_fields(swapUV):
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 def test_add_second_vector_field():
     lon = np.linspace(0.0, 10.0, 12, dtype=np.float32)
     lat = np.linspace(0.0, 10.0, 10, dtype=np.float32)
@@ -556,6 +575,7 @@ def sampleTemp(particle, fieldset, time):  # pragma: no cover
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 @pytest.mark.parametrize("tdim", [10, None])
 def test_fieldset_from_xarray(tdim):
     def generate_dataset(xdim, ydim, zdim=1, tdim=1):
@@ -611,6 +631,7 @@ def test_fieldset_frompop():
 
 
 @pytest.mark.v4alpha
+@pytest.mark.xfail(reason="GH1946")
 def test_fieldset_from_data_gridtypes():
     """Simple test for fieldset initialisation from data."""
     xdim, ydim, zdim = 20, 10, 4