Update variant calling threads directive

ahmig · ahmig · commit 73e8dc8fbaa9 · 2025-11-05T13:50:13.000+01:00
This accounts for the two processes spawned by samtools and ivar, which can lead to higher than expected CPU usage
diff --git a/workflow/rules/vaf.smk b/workflow/rules/vaf.smk
@@ -1,5 +1,5 @@
 rule snps_to_ancestor:
-    threads: 1
+    threads: 2
     retries: 3
     shadow: "minimal"
     conda: "../envs/var_calling.yaml"
