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1 parent e8d56ce commit 77c33faCopy full SHA for 77c33fa
1 file changed
workflow/rules/vaf.smk
@@ -168,6 +168,7 @@ rule format_vcf_fields_longer:
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params:
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colnames_mapping = config["ANNOTATION"]["SNPEFF_COLS"],
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filter_include = config["ANNOTATION"]["FILTER_INCLUDE"],
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+ filter_exclude = config["ANNOTATION"]["FILTER_EXCLUDE"],
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variant_name_pattern = lambda wildcards: config["ANNOTATION"]["VARIANT_NAME_PATTERN"], # lambda to deactivate automatic wildcard expansion in pattern
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sep = ",",
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input:
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