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Fix error column name
Hard-code using SnpEff name
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workflow/scripts/format_vcf_fields_longer.R

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -26,7 +26,7 @@ read_tsv(snakemake@input$tsv) %>%
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convert = TRUE
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) %>%
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# Separate &-delimited error column (more than one error/warning/info message per row is possible)
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separate_rows("ERRORS", sep = "&") %>%
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separate_rows("ANN[*].ERRORS", sep = "&") %>%
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# Rename "...[*]..." columns using the provided lookup via Snakemake config
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rename(all_of(unlist(snakemake@params$colnames_mapping))) %>%
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# Apply dynamic filters from the Snakemake config:

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