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1 parent 5c040f2 commit cd4d0e4Copy full SHA for cd4d0e4
1 file changed
workflow/rules/vaf.smk
@@ -42,12 +42,13 @@ rule snps_to_ancestor:
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-f renamed_reference.fasta \
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{input.bam} \
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| ivar variants \
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- -p {wildcards.sample} \
+ -p variants \
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-q {params.ivar_quality} \
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-t {params.ivar_freq} \
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-m {params.ivar_depth} \
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-g {input.gff} \
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-r renamed_reference.fasta
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+ mv variants.tsv {output.tsv:q}
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"""
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